Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0502.Seq
         (520 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    24   0.82 
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    24   0.82 

>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 24.2 bits (50), Expect = 0.82
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +2

Query: 134 CVSQNTGTCPESSCACPETSCACPETSCACPE 229
           C + N G C       P  +   P  SCACP+
Sbjct: 36  CQAVN-GHCSHLCLPAPRINSKSPLLSCACPD 66



 Score = 21.0 bits (42), Expect = 7.6
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = +2

Query: 161 PESSCACPETSCACPETSCACPENSLC 241
           P  +   P  SCACP+      +  +C
Sbjct: 51  PRINSKSPLLSCACPDGLKLLSDGLMC 77


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 24.2 bits (50), Expect = 0.82
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +2

Query: 134 CVSQNTGTCPESSCACPETSCACPETSCACPE 229
           C + N G C       P  +   P  SCACP+
Sbjct: 36  CQAVN-GHCSHLCLPAPRINSKSPLLSCACPD 66



 Score = 21.0 bits (42), Expect = 7.6
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = +2

Query: 161 PESSCACPETSCACPETSCACPENSLC 241
           P  +   P  SCACP+      +  +C
Sbjct: 51  PRINSKSPLLSCACPDGLKLLSDGLMC 77


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,385
Number of Sequences: 438
Number of extensions: 405
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)