Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0502.Seq
         (520 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g32190.1 68414.m03959 expressed protein                             30   0.81 

>At1g32190.1 68414.m03959 expressed protein
          Length = 422

 Score = 30.3 bits (65), Expect = 0.81
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 149 TGTCPESSCACPETSCACPETSCAC 223
           +G C   SC+CP+  C  P  SC C
Sbjct: 298 SGLC-RPSCSCPKPRCPKPSCSCGC 321



 Score = 27.9 bits (59), Expect = 4.3
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +2

Query: 155 TCPESSCACPETSCACPETSCAC 223
           +CP+  C  P  SC C    C C
Sbjct: 306 SCPKPRCPKPSCSCGCGCGDCGC 328


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,564,069
Number of Sequences: 28952
Number of extensions: 34927
Number of successful extensions: 137
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)