Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0501.Seq
         (650 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      25   0.71 
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      25   0.71 
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    23   2.2  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    23   2.2  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   3.8  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   6.7  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   6.7  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           21   8.8  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   8.8  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 24.6 bits (51), Expect = 0.71
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 554 NPGELAELSLRTHPSVMVTPTP 489
           +PG L+ LS  T P  MV P+P
Sbjct: 683 SPGALSGLSSLTSPGGMVLPSP 704



 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 125 PGHDLRPCLASEHLRNAPHAGEAGTGN 205
           PG D+R  +A    +      EAG GN
Sbjct: 622 PGTDIRQSIALSRKKKCIRYMEAGDGN 648


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 24.6 bits (51), Expect = 0.71
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 554 NPGELAELSLRTHPSVMVTPTP 489
           +PG L+ LS  T P  MV P+P
Sbjct: 575 SPGALSGLSSLTSPGGMVLPSP 596



 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 125 PGHDLRPCLASEHLRNAPHAGEAGTGN 205
           PG D+R  +A    +      EAG GN
Sbjct: 514 PGTDIRQSIALSRKKKCIRYMEAGDGN 540


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 424 EPVPKPQPDPSK 459
           EPVP P+P P++
Sbjct: 394 EPVPTPEPQPTQ 405


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -1

Query: 377 SSPNLTSSTPHPVMLALLTSTPSLFLLHK**GT-HLQDSP 261
           S+P LT ++P PV +   TST S           HL+DSP
Sbjct: 147 SAPILTKTSPTPVSINNNTSTSSSASSPSVTAAPHLRDSP 186


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 415 PITEPVPKPQPDPSKLKGCGYRNPMGVG 498
           P+T P P P   P  +   GY +PM  G
Sbjct: 116 PLT-PSPGPPSHPYTVISNGYSSPMSSG 142


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +1

Query: 265  ESCKCVPYYLCNK 303
            +   C  YYLCN+
Sbjct: 2245 DDTNCAQYYLCNQ 2257


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 376 EDCQENLEICCTNP 417
           +DC E ++ C TNP
Sbjct: 94  KDCGEYVDWCSTNP 107


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 612 GCIRLLLQRTIRSKRPAEPQPRGT 541
           G I    +  I+SKRP  P P  T
Sbjct: 34  GSITQPTKTVIQSKRPLAPAPERT 57


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -2

Query: 199  RAGFAGVGGVPKMFRSKAGSKVVSW 125
            RAGF   G  P  + S   S+ + W
Sbjct: 968  RAGFTAAGFFPIDYTSAFSSEKIVW 992


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,786
Number of Sequences: 336
Number of extensions: 3865
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)