Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0501.Seq
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    27   1.8  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    27   3.1  
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy...    26   4.1  
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    26   4.1  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    26   5.4  

>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
 Frame = -1

Query: 458 FEGSGCGFGTGSVMGLVQQISR---FSWQSSSPNLTSSTPHPVMLALLTST-PSLF 303
           F  SG    T  ++  + Q+S    FSW SSS  LT +    V  A+ T+  P +F
Sbjct: 151 FGASGITSNTDPIVDEIDQMSARFTFSWDSSSMQLTLTEGMAVTTAVYTNAIPQIF 206


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = -3

Query: 597 LLQRTIRSKRPAEPQPRGTRRTEPPYPPFRDG--NSDPHGVP 478
           LL   +++ + ++P      +TEP  P   DG  NS P  VP
Sbjct: 11  LLSNAVQAGQSSDPMQDDPAKTEPGTPKGYDGSKNSSPASVP 52


>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 454

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 428 GSVMGLVQQISRFSWQSSSPNLTSSTPHPVM 336
           GS++  +  + +   +  SP LTSS P P M
Sbjct: 87  GSILSWISPLKKMFSRKKSPTLTSSLPVPGM 117


>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 465 GMRLQEPHGGRSYHHGRVGTEAQFGE 542
           G R  +P G  +YH G++  E Q GE
Sbjct: 303 GTRFADPRGPCTYHWGKLFREKQGGE 328


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 412 NPITEPVPKPQPDPSKLKGCG 474
           NPI  PVP+P+ D ++ K CG
Sbjct: 579 NPI--PVPRPRVDLTQCKSCG 597


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,727,518
Number of Sequences: 5004
Number of extensions: 60106
Number of successful extensions: 244
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)