Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0501.Seq
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0019 + 19862171-19863049 34 0.11
02_05_0199 + 26667435-26667678,26667783-26667895,26668057-266682... 33 0.26
12_01_0889 - 8567209-8567490,8567539-8568009,8568116-8568136 31 0.60
12_01_0592 + 4848467-4849164,4849413-4849491 31 1.1
09_04_0093 - 14550806-14552452 31 1.1
10_02_0017 - 4256125-4256152,4256206-4256411 30 1.4
04_04_0186 - 23405477-23405566,23406204-23406275,23406914-234071... 30 1.4
03_04_0175 - 18092055-18092583,18092819-18093378 30 1.4
02_05_0686 - 30900748-30902167,30903442-30904742 30 1.4
12_02_0279 - 16704284-16704925 30 1.8
12_02_0043 + 12762257-12762678,12762751-12762778 30 1.8
03_03_0066 + 14214512-14215146,14215848-14216139,14216264-14216281 30 1.8
02_04_0021 + 18975992-18976408 26 2.0
01_02_0007 + 10132380-10133201 25 3.1
07_03_0471 + 18501496-18502104,18503009-18503260,18503367-185035... 29 3.2
06_03_1164 + 28104181-28104272,28104359-28104989 29 3.2
05_01_0380 + 2978256-2979284 29 3.2
01_01_0929 - 7344911-7345978 29 3.2
04_03_0978 - 21385894-21386097,21386330-21386791,21387580-21387786 29 4.2
10_08_0029 + 14270945-14271364,14271449-14272486 28 5.6
08_02_1094 + 24275719-24277029 28 5.6
01_05_0799 + 25334460-25334994,25335060-25335236,25335325-253354... 28 5.6
10_08_0850 + 21050164-21050189,21050874-21050979,21051186-210512... 28 7.4
08_02_0415 + 16898549-16898644,16899406-16899678,16899916-168999... 28 7.4
02_05_0490 + 29456825-29457499,29458771-29459057,29460922-294610... 28 7.4
01_05_0494 + 22701994-22703117,22703526-22703580 28 7.4
10_01_0332 - 3635909-3635912,3635947-3636003,3636004-3636053,363... 27 9.8
08_01_0529 + 4589434-4589652,4589897-4589953,4590106-4590237 27 9.8
07_03_0537 - 19218461-19218982,19219482-19219868,19219993-192201... 27 9.8
06_03_0981 + 26527005-26527260,26527457-26527770 27 9.8
04_04_0444 + 25270620-25273001 27 9.8
>03_05_0019 + 19862171-19863049
Length = 292
Score = 33.9 bits (74), Expect = 0.11
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = -3
Query: 576 SKRPAEPQPRGTRRTEPPYPPFRDGNSDP 490
+KRP EP P+ T+R +PP PP + S P
Sbjct: 173 AKRPPEPPPKTTQRQQPPGPPPKPQPSAP 201
>02_05_0199 +
26667435-26667678,26667783-26667895,26668057-26668250,
26668354-26668681
Length = 292
Score = 32.7 bits (71), Expect = 0.26
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 400 ICCTNPITEPVPKPQPDPSKLKGCGYRNPMG-VGVTITEGW 519
I C+ +++P PKP+P K + N G VT+T GW
Sbjct: 24 IACSRKLSKPKPKPKPSMKKPVVRAHNNYTGSPSVTVTTGW 64
>12_01_0889 - 8567209-8567490,8567539-8568009,8568116-8568136
Length = 257
Score = 31.5 bits (68), Expect = 0.60
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 358 DVRFGEEDCQENLEICCTNPITEPVPKPQPDPS 456
D+RF ++D E LE P+++P +P+P PS
Sbjct: 166 DLRFIQKDSGETLEFHSKEPLSQPPIEPEPCPS 198
>12_01_0592 + 4848467-4849164,4849413-4849491
Length = 258
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +2
Query: 479 GTPWGSELPSRKGGYGGSVRRVPLGCGSAG 568
G PW S L R+GG GG VP+ G G
Sbjct: 149 GRPWDSRLMLRQGGGGGGGMPVPMNGGHHG 178
>09_04_0093 - 14550806-14552452
Length = 548
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = -3
Query: 567 PAEPQPRGTRRTEPPYPPFRDGNSDPHGVPVAASLQLR 454
P + G RR PP PP N PH VP + +LQ R
Sbjct: 2 PRDGDGHGRRRPPPPPPPGHPPNLPPH-VPYSRALQQR 38
>10_02_0017 - 4256125-4256152,4256206-4256411
Length = 77
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -1
Query: 209 PGSPCRLRRRGGRSEDVQKQGRV*GRVLG 123
P P ++RRRGG S V+ +G V GR G
Sbjct: 13 PSFPPQIRRRGGASAAVRSEGSVDGRPAG 41
>04_04_0186 -
23405477-23405566,23406204-23406275,23406914-23407198,
23407300-23407305
Length = 150
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -3
Query: 582 IRSKRPAEPQPRGTRRTEPPYPPFRDGNSDPH 487
++ K+P P+ + EPP PP R G PH
Sbjct: 74 VKEKKPDLPKKPDPPKPEPPKPPVRRGFPGPH 105
>03_04_0175 - 18092055-18092583,18092819-18093378
Length = 362
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 358 DVRFGEEDCQENLEICCTNPITEPVPKPQPDPS 456
D+RF ++D E LE+ P ++P +P+P PS
Sbjct: 226 DLRFIQKDSGETLELHSKEPPSQPPIEPEPCPS 258
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = -3
Query: 567 PAEPQPRGTRRTEPPYPPFRDGNSDPHGVP-VAASLQLRGVRLRLWHGFRYGISAAD 400
P P P G ++ PP PP + G S P P V + +L+ H + ++A D
Sbjct: 364 PPPPPPPGGKKGGPPPPPPKGGASRPPAAPGVPTGSADQQAKLKPLHWDKVNVAATD 420
>12_02_0279 - 16704284-16704925
Length = 213
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 373 EEDCQENLEICCTNPITEPVPKPQPDPSKLKG 468
+ED E LE+ P ++P KP+P PS +G
Sbjct: 72 KEDSGETLELLSREPASQPPIKPKPCPSGSQG 103
>12_02_0043 + 12762257-12762678,12762751-12762778
Length = 149
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 358 DVRFGEEDCQENLEICCTNPITEPVPKPQPDPS 456
D+ F +ED E LE+ P ++P +P+P PS
Sbjct: 17 DLHFIQEDSGETLELHSKEPPSQPPIEPEPCPS 49
>03_03_0066 + 14214512-14215146,14215848-14216139,14216264-14216281
Length = 314
Score = 29.9 bits (64), Expect = 1.8
Identities = 24/60 (40%), Positives = 31/60 (51%)
Frame = -3
Query: 630 PVMTT*GCIRLLLQRTIRSKRPAEPQPRGTRRTEPPYPPFRDGNSDPHGVPVAASLQLRG 451
PV+ + + LLL ++RS RP P P G RR PP PP G+PV +L L G
Sbjct: 12 PVVLSAAFLCLLLHLSLRSYRP--PSPGGGRRL-PPGPP---------GLPVLGALPLVG 59
>02_04_0021 + 18975992-18976408
Length = 138
Score = 26.2 bits (55), Expect(2) = 2.0
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Frame = +1
Query: 382 CQENLEICCTN-PITEPVPKPQPDP 453
C +N +C +T P PKP+P P
Sbjct: 82 CNQNSIVCMVRCALTPPPPKPKPTP 106
Score = 22.2 bits (45), Expect(2) = 2.0
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = +1
Query: 427 PVPKPQPDPSKLKGCG 474
P P P P P K G G
Sbjct: 116 PAPSPSPPPPKAAGHG 131
>01_02_0007 + 10132380-10133201
Length = 273
Score = 25.4 bits (53), Expect(2) = 3.1
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +1
Query: 412 NPITEPVPKPQPDP 453
NP +P+P+PQP P
Sbjct: 67 NPQPQPLPQPQPQP 80
Score = 22.2 bits (45), Expect(2) = 3.1
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +1
Query: 427 PVPKPQPDPSKLKG 468
P P+PQP P L G
Sbjct: 88 PQPQPQPQPLPLPG 101
>07_03_0471 + 18501496-18502104,18503009-18503260,18503367-18503537,
18503693-18503743,18503868-18503960,18504125-18504220,
18504318-18504368,18504452-18504570,18504909-18505017,
18505391-18505513,18505590-18505661,18505963-18506034,
18506125-18506191,18506260-18506402,18506494-18506565,
18506632-18506760,18507317-18507472,18507579-18507692,
18507791-18507889,18507974-18508051,18508402-18508536,
18509081-18509155,18509247-18509361,18509458-18509828,
18509903-18509965,18510049-18510120,18510285-18510413,
18510512-18510628,18510902-18511018
Length = 1289
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -3
Query: 552 PRGTRRTEPPYPPFRDGNSDPHGVPVAASL 463
P G P+PPF +S P+ +P SL
Sbjct: 1020 PSGYPLPRMPFPPFAGAHSQPYAIPTRGSL 1049
>06_03_1164 + 28104181-28104272,28104359-28104989
Length = 240
Score = 29.1 bits (62), Expect = 3.2
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = -2
Query: 262 RSYRKHAVALRRLNDDVFQVPRAGFAGVGGVPKMFRSKAGSKVVSWARPTVTSTASKSER 83
R +RK +LN D G A +GGV +R G+ ++ +A T+T+S +E
Sbjct: 77 RIWRKPEEGWMKLNFDGSSKHSTGIASIGGV---YRDHDGAFLLGYAERIGTATSSVAEL 133
Query: 82 IAL 74
AL
Sbjct: 134 AAL 136
>05_01_0380 + 2978256-2979284
Length = 342
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/52 (34%), Positives = 22/52 (42%)
Frame = -3
Query: 603 RLLLQRTIRSKRPAEPQPRGTRRTEPPYPPFRDGNSDPHGVPVAASLQLRGV 448
RL L RT R + P P P PP PF S+P A + + GV
Sbjct: 14 RLALGRTERVRMPPPPPPPPPPPPPPPPRPFSRKPSEPAAPSTRAVVAVTGV 65
>01_01_0929 - 7344911-7345978
Length = 355
Score = 29.1 bits (62), Expect = 3.2
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Frame = -3
Query: 567 PAEPQPRGTRRTEPPYPPFRDGNSDP-HGVPVAASL--QLRGVRLRLWHG 427
P P P TRR PP PPF S P G+P+ +R LWHG
Sbjct: 23 PPSP-PSKTRRPPPPPPPFCPHLSVPCVGLPLPPPCPPPPGAIRFPLWHG 71
>04_03_0978 - 21385894-21386097,21386330-21386791,21387580-21387786
Length = 290
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -3
Query: 576 SKRPAEPQPRGTRRTEPPYPPFRDGNSDP 490
S+RPA P RRT PP R +DP
Sbjct: 40 SRRPATPSLLSLRRTHAAPPPLRAAAADP 68
>10_08_0029 + 14270945-14271364,14271449-14272486
Length = 485
Score = 28.3 bits (60), Expect = 5.6
Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 3/81 (3%)
Frame = +3
Query: 351 SAGCQVRRRRLPREPGDLLH*SHNGTRAKAAAGPLEVEGMRLQEPHG---GRSYHHGRVG 521
SA Q LP+ P H +R + P V+ R G YHH +
Sbjct: 372 SAPRQRTEPHLPQPPPPPPHFERQPSRRRGGGVPRSVKMQRSSSHVGVPAAHGYHHHHLY 431
Query: 522 TEAQFGEFPWVVALLDALNES 584
+ +G++PW V LD + S
Sbjct: 432 S---YGQYPWSVKQLDRSSAS 449
>08_02_1094 + 24275719-24277029
Length = 436
Score = 28.3 bits (60), Expect = 5.6
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +1
Query: 499 VTITEGWVRRLSSASSPGLW 558
+T T+GW ++ ++ASSP W
Sbjct: 234 LTTTDGWKKKKAAASSPAAW 253
>01_05_0799 + 25334460-25334994,25335060-25335236,25335325-25335447,
25335559-25335624,25335717-25336685,25336791-25336912,
25337156-25337549,25337888-25338009,25338253-25338646,
25338983-25339104,25339348-25339830,25340291-25340960,
25341713-25342224,25342484-25342540
Length = 1581
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 161 HLRNAPHAGEAGTGNLEDIIVKPTESNSVFT 253
HL N + +GNLED++ KP+ + T
Sbjct: 1173 HLPNMQYVAYDESGNLEDVVNKPSNKKTTLT 1203
>10_08_0850 + 21050164-21050189,21050874-21050979,21051186-21051257,
21051775-21051828,21052077-21052184,21052653-21052802,
21052914-21053258,21053361-21054801,21054844-21055675,
21057060-21057325,21057530-21059603,21060172-21060442,
21060556-21060990
Length = 2059
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Frame = -3
Query: 438 LWHGFRYGISAA---DLQVLLAVFFAEPDI-QHSPPRHAGVINVHPFIVLVTQIVGDA 277
LW + Y S + D+Q+ ++ A DI +H P R N+H F L+ VGD+
Sbjct: 1390 LWRPYLYDTSTSNHEDIQLYQSLLGAISDITRHQPFRDVCFRNMHLFYDLLAADVGDS 1447
>08_02_0415 +
16898549-16898644,16899406-16899678,16899916-16899996,
16900094-16900369,16900414-16900932
Length = 414
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -1
Query: 467 PFNFEGSGCGFGTGSVMGLVQQISR-FSWQSSSPNLTSSTPHPVMLALLTSTPS 309
P + + C F T ++ L+ Q+ R FS SSS N ++ H + PS
Sbjct: 77 PHHTQSPPCNFATDAMAHLIHQVERDFSPSSSSANRGTTPMHNATNLIDVQAPS 130
>02_05_0490 + 29456825-29457499,29458771-29459057,29460922-29461039,
29461451-29461972,29462058-29462170,29463033-29463053,
29463726-29463960,29464218-29464381,29464695-29464776,
29465077-29465166,29465625-29465858,29466347-29466418,
29466857-29467000,29467573-29467659,29467940-29468098,
29469216-29469476,29469789-29469836
Length = 1103
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +3
Query: 381 LPREPGDLLH*SHNGTRAKAAAGPLEVEGMRLQEPH 488
L R PGDLL +G + LE++G LQE H
Sbjct: 1049 LLRGPGDLLGKKQSGHLPEFPIARLEIDGSILQEAH 1084
>01_05_0494 + 22701994-22703117,22703526-22703580
Length = 392
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -1
Query: 401 ISRFSWQSSSPNLTSSTPHPVMLA 330
++RF+ S+SP SS+P P MLA
Sbjct: 143 VARFATLSASPPTPSSSPRPYMLA 166
>10_01_0332 -
3635909-3635912,3635947-3636003,3636004-3636053,
3637887-3637945,3638054-3638114,3638938-3640479
Length = 590
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -3
Query: 270 RFPVLTVNTLLLSVGLTMMSSRFPVPASPAW 178
R P + L V L ++S+ FP+P SP+W
Sbjct: 32 RLPDFARSVNLKYVKLGLLSAGFPMPPSPSW 62
>08_01_0529 + 4589434-4589652,4589897-4589953,4590106-4590237
Length = 135
Score = 27.5 bits (58), Expect = 9.8
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = -3
Query: 609 CIRLLLQRTIRSKRPAEPQPRGTRRTEPPYPPFRDGNSDPHGVPVAASL-QLRGVRLR 439
C R + Q +R+++PA + R PP PP G S P A S+ + + RLR
Sbjct: 10 CARAV-QAAVRAEQPATTRRRPPHAGRPP-PPSSGGGSPAEVAPAAKSVAEEKARRLR 65
>07_03_0537 - 19218461-19218982,19219482-19219868,19219993-19220154,
19220464-19221117,19221233-19221277,19223300-19223845,
19223930-19224307,19224642-19225313,19225373-19225456
Length = 1149
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 515 GGYGGSVRRVPLGCGSAGRFERI 583
GG GG+VRR C A RF R+
Sbjct: 1114 GGGGGAVRRSSRSCVQAKRFRRV 1136
>06_03_0981 + 26527005-26527260,26527457-26527770
Length = 189
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +1
Query: 391 NLEICCTNPITEPVPKPQPDPSKLKGCGYRNPMGVG-VTITEGWVRRLSSASSPG 552
++E+ C P+P P P + + C R G V ++ W RR SS G
Sbjct: 53 DVELACAALAGSGRPRPVPSPPRQRACLCRYGRGENLVPASDEWRRRYDVVSSFG 107
>04_04_0444 + 25270620-25273001
Length = 793
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +2
Query: 524 GGSVRRVPLGCGSAGRF 574
GG VR VPL CG RF
Sbjct: 342 GGCVRNVPLNCGVTDRF 358
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,055,698
Number of Sequences: 37544
Number of extensions: 531557
Number of successful extensions: 2817
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 2279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2792
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -