Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0501.Seq
(650 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11512| Best HMM Match : E-MAP-115 (HMM E-Value=1.4) 33 0.20
SB_29635| Best HMM Match : E-MAP-115 (HMM E-Value=1.2) 33 0.20
SB_25840| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.35
SB_36850| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_17357| Best HMM Match : IMS (HMM E-Value=0) 30 1.4
SB_5000| Best HMM Match : EGF_CA (HMM E-Value=0) 30 1.4
SB_55657| Best HMM Match : EGF_CA (HMM E-Value=0) 30 1.4
SB_12718| Best HMM Match : rve (HMM E-Value=0.0031) 29 2.5
SB_17712| Best HMM Match : Retrotrans_gag (HMM E-Value=0.32) 29 3.3
SB_41022| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_30795| Best HMM Match : Epimerase (HMM E-Value=0) 29 4.3
SB_28574| Best HMM Match : KE2 (HMM E-Value=1.2) 29 4.3
SB_59675| Best HMM Match : DUF1052 (HMM E-Value=6.3) 28 5.7
SB_58220| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_50285| Best HMM Match : SAP (HMM E-Value=0.0036) 28 5.7
SB_49727| Best HMM Match : RVT_1 (HMM E-Value=4.5e-07) 28 5.7
SB_48733| Best HMM Match : RVT_1 (HMM E-Value=5.2e-05) 28 5.7
SB_48665| Best HMM Match : CM1 (HMM E-Value=2.5) 28 5.7
SB_36290| Best HMM Match : Retrotrans_gag (HMM E-Value=0.32) 28 5.7
SB_32994| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_27476| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_13234| Best HMM Match : PSI (HMM E-Value=4.4) 28 5.7
SB_58411| Best HMM Match : SKIP_SNW (HMM E-Value=3.2) 28 5.7
SB_57607| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_55917| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_44935| Best HMM Match : SAP (HMM E-Value=1.7e-09) 28 5.7
SB_35914| Best HMM Match : Retrotrans_gag (HMM E-Value=0.46) 28 5.7
SB_35469| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_27101| Best HMM Match : Retrotrans_gag (HMM E-Value=0.26) 28 5.7
SB_22423| Best HMM Match : ASC (HMM E-Value=1.8e-05) 28 5.7
SB_16322| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_12214| Best HMM Match : SAP (HMM E-Value=0.0036) 28 5.7
SB_8981| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_4405| Best HMM Match : Retrotrans_gag (HMM E-Value=1.3) 28 5.7
SB_769| Best HMM Match : Retrotrans_gag (HMM E-Value=0.32) 28 5.7
SB_50335| Best HMM Match : Baculo_11_kDa (HMM E-Value=2.1) 28 7.6
SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
>SB_11512| Best HMM Match : E-MAP-115 (HMM E-Value=1.4)
Length = 639
Score = 33.1 bits (72), Expect = 0.20
Identities = 19/41 (46%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -3
Query: 576 SKRPAEPQP--RGTRRTEPPYPPFRDGNSDPHGVPVAASLQ 460
S RPA PQP R R P P RD + DP V V S+Q
Sbjct: 580 SPRPARPQPEPRHLRSPPEPKPRHRDSSHDPVTVQVMESIQ 620
>SB_29635| Best HMM Match : E-MAP-115 (HMM E-Value=1.2)
Length = 2658
Score = 33.1 bits (72), Expect = 0.20
Identities = 19/41 (46%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -3
Query: 576 SKRPAEPQP--RGTRRTEPPYPPFRDGNSDPHGVPVAASLQ 460
S RPA PQP R R P P RD + DP V V S+Q
Sbjct: 2599 SPRPARPQPEPRHLRSPPEPKPRHRDSSHDPVTVQVMESIQ 2639
>SB_25840| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 768
Score = 32.3 bits (70), Expect = 0.35
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +1
Query: 343 GWGVLDVRFGEEDCQENLEICCTNPITEPVPKPQPDPSKLKG 468
GW + DV+F D E + P+ EP P+P P P G
Sbjct: 312 GWTLEDVQFELIDMNEEKPV--DEPVAEPKPEPPPQPDSAPG 351
>SB_36850| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1008
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = +1
Query: 409 TNPITEPVPKPQ--PDPSKLKGCGY-RNPMGVGVTITEGWVRRLSS 537
++P+T P+PKPQ P PSK G G+ RN + + W +R S
Sbjct: 215 SHPLTRPIPKPQRPPQPSK-SGSGWARNSTQMRPPQSNVWQQRQQS 259
>SB_17357| Best HMM Match : IMS (HMM E-Value=0)
Length = 990
Score = 30.3 bits (65), Expect = 1.4
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = -2
Query: 205 VPRAGFAGVG-GVPKMFRSKAGSKVVSWARPTVTSTASKSERIALLLLKHSEKENRQNFT 29
+P F G+G V K+ S AGSK + STA K E+ + S+KE++Q +
Sbjct: 575 IPAHDFRGLGIQVSKLTNSSAGSKTLFDFMRCEDSTAEKPEKDEIRTA--SDKEDKQPYV 632
Query: 28 SLYYEN 11
+ EN
Sbjct: 633 NAVGEN 638
>SB_5000| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 1050
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Frame = +1
Query: 262 GESCKCVPYYLCNKNNEGVDVNNASMTGWGV--LDVRFGEEDCQENLEICCTN 414
G CKC P Y+ + N V +SM + D G DC N + CTN
Sbjct: 439 GYKCKCRPGYISSNNGRICTVVTSSMNPLDINECDPILGSNDCGANTD--CTN 489
>SB_55657| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 868
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Frame = +1
Query: 262 GESCKCVPYYLCNKNNEGVDVNNASMTGWGV--LDVRFGEEDCQENLEICCTN 414
G CKC P Y+ + N V +SM + D G DC N + CTN
Sbjct: 265 GYKCKCRPGYISSNNGRICTVVTSSMNPLDINECDPILGSNDCGANTD--CTN 315
>SB_12718| Best HMM Match : rve (HMM E-Value=0.0031)
Length = 1667
Score = 29.5 bits (63), Expect = 2.5
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Frame = +1
Query: 394 LEICCTNPIT----EPVPKPQPDPSKLKGCGYRNPMGVGVTITEGWVRRLSS 537
LE C +P T E +P+ QP+ SKL ++ VG ++T V+R+S+
Sbjct: 861 LEFCLRHPYTIALVEGLPERQPEVSKLSRPSGKSREMVGKSLTHDDVKRMSA 912
>SB_17712| Best HMM Match : Retrotrans_gag (HMM E-Value=0.32)
Length = 241
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = -3
Query: 519 PPFRDGNSDPHGVPVAASLQLRGVRLRLWHGFRYGISAADLQVLLAVF-FAEPDIQHS 349
PP R D V + S++ + LR W FR G D Q +F A PD+ S
Sbjct: 45 PPARGPKLDRPKVDIGISIEEWNIFLRRWGVFRSGSGITDAQAPFQLFQCAGPDLGDS 102
>SB_41022| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 580
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/59 (28%), Positives = 23/59 (38%)
Frame = +1
Query: 331 ASMTGWGVLDVRFGEEDCQENLEICCTNPITEPVPKPQPDPSKLKGCGYRNPMGVGVTI 507
A + W V G Q + C + PVP P PS+ + C RNP T+
Sbjct: 279 AKWSTWTVCSASCGSSGVQSRNQFCPSGKCEPPVPDPP--PSETRECN-RNPCNPPTTL 334
>SB_30795| Best HMM Match : Epimerase (HMM E-Value=0)
Length = 869
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/52 (34%), Positives = 21/52 (40%)
Frame = +3
Query: 384 PREPGDLLH*SHNGTRAKAAAGPLEVEGMRLQEPHGGRSYHHGRVGTEAQFG 539
PR DL G R GP + + P GGRSY R G A +G
Sbjct: 713 PRGGRDLYEEGPRGGREVNLEGPRGGRDLYEEGPRGGRSYDGPRGGRSAVYG 764
>SB_28574| Best HMM Match : KE2 (HMM E-Value=1.2)
Length = 210
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = +3
Query: 420 NGTRAKAAAGPLEVEGMRLQEPHGGRSYHHGRV 518
N TRAKA LE+E RLQ+ H S H V
Sbjct: 95 NVTRAKAQHEELELEYNRLQQQHSRLSSEHQEV 127
>SB_59675| Best HMM Match : DUF1052 (HMM E-Value=6.3)
Length = 151
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = -3
Query: 519 PPFRDGNSDPHGVPVAASLQLRGVRLRLWHGFRYGISAADLQVLLAVF-FAEPDIQHS 349
PP R D V + S++ + +R W FR G D Q +F A PD+ S
Sbjct: 45 PPARGPKLDRPKVDIGISIEEWNIFMRRWGVFRSGSGITDAQAPFQLFQCAGPDLGDS 102
>SB_58220| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 207
Score = 28.3 bits (60), Expect = 5.7
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Frame = +1
Query: 349 GVLDVRFGEEDCQENL----EICCTNPITEPV----PKPQPDPSKLKGCGYRNPMGVGVT 504
G L F +E C++ L E C NP + PV P+P P L Y+N +T
Sbjct: 72 GELYTEFLKESCKKTLGTSCEYCLKNPWSGPVMTRIPRPFPSADDLPEFHYKNVHSTPLT 131
Query: 505 ITEG 516
++G
Sbjct: 132 DSKG 135
>SB_50285| Best HMM Match : SAP (HMM E-Value=0.0036)
Length = 1136
Score = 28.3 bits (60), Expect = 5.7
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Frame = +1
Query: 349 GVLDVRFGEEDCQENL----EICCTNPITEPV----PKPQPDPSKLKGCGYRNPMGVGVT 504
G L F +E C++ L E C NP + PV P+P P L Y+N +T
Sbjct: 887 GELYTEFLKESCKKTLGTSCEYCLKNPWSGPVMTRIPRPFPSADDLPEFHYKNVHSTPLT 946
Query: 505 ITEG 516
++G
Sbjct: 947 DSKG 950
>SB_49727| Best HMM Match : RVT_1 (HMM E-Value=4.5e-07)
Length = 1286
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = -3
Query: 519 PPFRDGNSDPHGVPVAASLQLRGVRLRLWHGFRYGISAADLQVLLAVF-FAEPDIQHS 349
PP R D V + S++ + +R W FR G D Q +F A PD+ S
Sbjct: 45 PPARGPKLDRPKVDIGISIEEWNIFMRRWGVFRSGSGITDAQAPFQLFQCAGPDLGDS 102
>SB_48733| Best HMM Match : RVT_1 (HMM E-Value=5.2e-05)
Length = 1104
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = -3
Query: 519 PPFRDGNSDPHGVPVAASLQLRGVRLRLWHGFRYGISAADLQVLLAVF-FAEPDIQHS 349
PP R D V + S++ + +R W FR G D Q +F A PD+ S
Sbjct: 45 PPARGPKLDRPKVDIGISIEEWNIFMRRWGVFRSGSGITDAQAPFQLFQCAGPDLGDS 102
>SB_48665| Best HMM Match : CM1 (HMM E-Value=2.5)
Length = 632
Score = 28.3 bits (60), Expect = 5.7
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Frame = +1
Query: 349 GVLDVRFGEEDCQENL----EICCTNPITEPV----PKPQPDPSKLKGCGYRNPMGVGVT 504
G L F +E C++ L E C NP + PV P+P P L Y+N +T
Sbjct: 414 GELYTEFLKESCKKTLGTSCEYCLKNPWSGPVMTRIPRPFPSADDLPEFHYKNVHSTPLT 473
Query: 505 ITEG 516
++G
Sbjct: 474 DSKG 477
>SB_36290| Best HMM Match : Retrotrans_gag (HMM E-Value=0.32)
Length = 230
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = -3
Query: 519 PPFRDGNSDPHGVPVAASLQLRGVRLRLWHGFRYGISAADLQVLLAVF-FAEPDIQHS 349
PP R D V + S++ + +R W FR G D Q +F A PD+ S
Sbjct: 10 PPARGPKLDRPKVDIGISIEEWNIFMRRWGVFRSGSGITDAQAPFQLFQCAGPDLGDS 67
>SB_32994| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 662
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = -3
Query: 519 PPFRDGNSDPHGVPVAASLQLRGVRLRLWHGFRYGISAADLQVLLAVF-FAEPDIQHS 349
PP R D V + S++ + +R W FR G D Q +F A PD+ S
Sbjct: 47 PPARGPKLDRPKVDIGISIEEWNIFMRRWGVFRSGSGITDAQAPFQLFQCAGPDLGDS 104
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = -3
Query: 612 GCIRLLLQRTIRSKRPAEPQPRGTRRTEPPYPPFRDGNSDPH 487
G + L +R +R+ PA P P RT PP PP R PH
Sbjct: 519 GRLTLRNRRFLRAYTPATPTPDHQYRTPPP-PP-RSPECQPH 558
>SB_27476| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 528
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = -3
Query: 519 PPFRDGNSDPHGVPVAASLQLRGVRLRLWHGFRYGISAADLQVLLAVF-FAEPDIQHS 349
PP R D V + S++ + +R W FR G D Q +F A PD+ S
Sbjct: 45 PPARGPKLDRPKVDIGISIEEWNIFMRRWGVFRSGSGITDAQAPFQLFQCAGPDLGDS 102
>SB_13234| Best HMM Match : PSI (HMM E-Value=4.4)
Length = 240
Score = 28.3 bits (60), Expect = 5.7
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Frame = +1
Query: 349 GVLDVRFGEEDCQENL----EICCTNPITEPV----PKPQPDPSKLKGCGYRNPMGVGVT 504
G L F +E C++ L E C NP + PV P+P P L Y+N +T
Sbjct: 100 GELYTEFLKESCKKTLGTSCEYCLKNPWSGPVMTCIPRPFPSADDLPEFHYKNVHSTPLT 159
Query: 505 ITEG 516
++G
Sbjct: 160 DSKG 163
>SB_58411| Best HMM Match : SKIP_SNW (HMM E-Value=3.2)
Length = 353
Score = 28.3 bits (60), Expect = 5.7
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Frame = +1
Query: 349 GVLDVRFGEEDCQENL----EICCTNPITEPV----PKPQPDPSKLKGCGYRNPMGVGVT 504
G L F +E C++ L E C NP + PV P+P P L Y+N +T
Sbjct: 157 GELYTEFLKESCKKTLGTSCEYCLKNPWSGPVMTRIPRPFPSADDLPEFHYKNVHSTPLT 216
Query: 505 ITEG 516
++G
Sbjct: 217 DSKG 220
>SB_57607| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 597 LLQRTIRSKRPAEPQPRGTRRTEPPYPPFR 508
L+QR++ +R P PR R PP PP R
Sbjct: 298 LMQRSLLQRRGHPPLPRLRLRLTPPPPPSR 327
>SB_55917| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1412
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = -3
Query: 519 PPFRDGNSDPHGVPVAASLQLRGVRLRLWHGFRYGISAADLQVLLAVF-FAEPDIQHS 349
PP R D V + S++ + +R W FR G D Q +F A PD+ S
Sbjct: 45 PPARGPKLDRPKVDIGISIEEWNIFMRRWGVFRSGSGITDAQAPFQLFQCAGPDLGDS 102
>SB_44935| Best HMM Match : SAP (HMM E-Value=1.7e-09)
Length = 1487
Score = 28.3 bits (60), Expect = 5.7
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Frame = +1
Query: 349 GVLDVRFGEEDCQENL----EICCTNPITEPV----PKPQPDPSKLKGCGYRNPMGVGVT 504
G L F +E C++ L E C NP + PV P+P P L Y+N +T
Sbjct: 861 GELYTEFLKESCKKTLGTSCEYCLKNPWSGPVMTRIPRPFPSADDLPEFHYKNVHSTPLT 920
Query: 505 ITEG 516
++G
Sbjct: 921 DSKG 924
Score = 28.3 bits (60), Expect = 5.7
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Frame = +1
Query: 349 GVLDVRFGEEDCQENL----EICCTNPITEPV----PKPQPDPSKLKGCGYRNPMGVGVT 504
G L F +E C++ L E C NP + PV P+P P L Y+N +T
Sbjct: 1238 GELYTEFLKESCKKTLGTSCEYCLKNPWSGPVMTRIPRPFPSADDLPEFHYKNVHSTPLT 1297
Query: 505 ITEG 516
++G
Sbjct: 1298 DSKG 1301
>SB_35914| Best HMM Match : Retrotrans_gag (HMM E-Value=0.46)
Length = 252
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = -3
Query: 519 PPFRDGNSDPHGVPVAASLQLRGVRLRLWHGFRYGISAADLQVLLAVF-FAEPDIQHS 349
PP R D V + S++ + +R W FR G D Q +F A PD+ S
Sbjct: 11 PPARGPKLDRPKVDIGISIEEWNIFMRRWGVFRSGSGITDAQAPFQLFQCAGPDLGDS 68
>SB_35469| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 906
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = -3
Query: 519 PPFRDGNSDPHGVPVAASLQLRGVRLRLWHGFRYGISAADLQVLLAVF-FAEPDIQHS 349
PP R D V + S++ + +R W FR G D Q +F A PD+ S
Sbjct: 45 PPARGPKLDRPKVDIGISIEEWNIFMRRWGVFRSGSGITDAQAPFQLFQCAGPDLGDS 102
>SB_27101| Best HMM Match : Retrotrans_gag (HMM E-Value=0.26)
Length = 447
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = -3
Query: 519 PPFRDGNSDPHGVPVAASLQLRGVRLRLWHGFRYGISAADLQVLLAVF-FAEPDIQHS 349
PP R D V + S++ + +R W FR G D Q +F A PD+ S
Sbjct: 45 PPARGPKLDRPKVDIGISIEEWNIFMRRWGVFRSGSGITDAQAPFQLFQCAGPDLGDS 102
>SB_22423| Best HMM Match : ASC (HMM E-Value=1.8e-05)
Length = 348
Score = 28.3 bits (60), Expect = 5.7
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Frame = -2
Query: 166 KMFRSKAGSKVVSWARPTVTSTASKSE---RIALLLLKHSEKENRQNFTSL--YYE 14
K+ + A S + P VTS +KSE R+ L ++ EK R+N SL YYE
Sbjct: 261 KLSYANAVGNAFSQSLPPVTSEGAKSESYKRLLNLTVEKREKYFRENVVSLDVYYE 316
>SB_16322| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 271
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = -3
Query: 519 PPFRDGNSDPHGVPVAASLQLRGVRLRLWHGFRYGISAADLQVLLAVF-FAEPDIQHS 349
PP R D V + S++ + +R W FR G D Q +F A PD+ S
Sbjct: 45 PPARGPKLDRPKVDIGISIEEWNIFMRRWGVFRSGSGITDAQAPFQLFQCAGPDLGDS 102
>SB_12214| Best HMM Match : SAP (HMM E-Value=0.0036)
Length = 352
Score = 28.3 bits (60), Expect = 5.7
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Frame = +1
Query: 349 GVLDVRFGEEDCQENL----EICCTNPITEPV----PKPQPDPSKLKGCGYRNPMGVGVT 504
G L F +E C++ L E C NP + PV P+P P L Y+N +T
Sbjct: 79 GELYTEFLKESCKKTLGTSCEYCLKNPWSGPVMTRIPRPFPSADDLPEFHYKNVHSTPLT 138
Query: 505 ITEG 516
++G
Sbjct: 139 DSKG 142
>SB_8981| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1726
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +1
Query: 397 EICCTNPITEPVPKPQPDPSKLKGCGYRNP 486
+I T P T PV +P PS+ C NP
Sbjct: 1181 QINATEPSTHPVSQPGSSPSQTSTCSQVNP 1210
>SB_4405| Best HMM Match : Retrotrans_gag (HMM E-Value=1.3)
Length = 286
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = -3
Query: 519 PPFRDGNSDPHGVPVAASLQLRGVRLRLWHGFRYGISAADLQVLLAVF-FAEPDIQHS 349
PP R D V + S++ + +R W FR G D Q +F A PD+ S
Sbjct: 45 PPARGPKLDRPKVDIGISIEEWNIFMRRWGVFRSGSGITDAQAPFQLFQCAGPDLGDS 102
>SB_769| Best HMM Match : Retrotrans_gag (HMM E-Value=0.32)
Length = 500
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = -3
Query: 519 PPFRDGNSDPHGVPVAASLQLRGVRLRLWHGFRYGISAADLQVLLAVF-FAEPDIQHS 349
PP R D V + S++ + +R W FR G D Q +F A PD+ S
Sbjct: 45 PPARGPKLDRPKVDIGISIEEWNIFMRRWGVFRSGSGITDAQAPFQLFQCAGPDLGDS 102
>SB_50335| Best HMM Match : Baculo_11_kDa (HMM E-Value=2.1)
Length = 370
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +3
Query: 396 GDLLH*SHNGTRAKAAAGPLEVEGMRLQEPHGGRSYHH 509
G LL HN + + +E EG+ + H G SY H
Sbjct: 305 GYLLSQKHNAEKTEYICVDIEAEGVASSQDHPGASYLH 342
>SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 469
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -3
Query: 570 RPAEPQPRGTRRTEPP-YPPFRDGNSDPHGVPVAASLQLR 454
RP P PR + T+PP YPP R + P+ S LR
Sbjct: 104 RPLTPPPRQSNTTQPPAYPP-RQSYALQQTTPLHTSQPLR 142
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,847,533
Number of Sequences: 59808
Number of extensions: 518418
Number of successful extensions: 2161
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 1824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2151
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -