Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0501.Seq
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g38140.1 68417.m05385 zinc finger (C3HC4-type RING finger) fa...    31   0.50 
At1g55560.1 68414.m06359 multi-copper oxidase type I family prot...    31   0.50 
At3g13400.1 68416.m01685 multi-copper oxidase type I family prot...    31   0.66 
At1g55570.1 68414.m06360 multi-copper oxidase type I family prot...    30   1.5  
At3g13390.1 68416.m01684 multi-copper oxidase type I family prot...    29   2.0  
At4g17245.1 68417.m02593 zinc finger (C3HC4-type RING finger) fa...    29   2.7  
At1g08400.1 68414.m00929 chromosome structural maintenance prote...    29   2.7  
At4g04920.1 68417.m00715 expressed protein                             29   3.5  
At2g33835.1 68415.m04152 zinc finger (CCCH-type) family protein ...    29   3.5  
At2g01440.1 68415.m00067 ATP-dependent DNA helicase, putative          29   3.5  
At5g13260.1 68418.m01523 expressed protein                             28   4.7  
At5g66230.1 68418.m08343 expressed protein                             28   6.2  
At5g19270.1 68418.m02295 hypothetical protein                          28   6.2  
At4g34440.1 68417.m04894 protein kinase family protein contains ...    27   8.2  
At3g12350.1 68416.m01540 F-box family protein  ; similar to SKP1...    27   8.2  
At3g10550.1 68416.m01266 expressed protein                             27   8.2  
At1g25180.1 68414.m03127 hypothetical protein                          27   8.2  
At1g25112.1 68414.m03120 hypothetical protein                          27   8.2  
At1g25025.1 68414.m03116 hypothetical protein                          27   8.2  
At1g24851.1 68414.m03110 hypothetical protein                          27   8.2  

>At4g38140.1 68417.m05385 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 145

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +1

Query: 268 SCKCVPYYLCNKNNEGVDVNNASMTGWGVLDVRFGEEDCQENLEICC 408
           +C C+P     KN    D ++    G+ ++ V FG+++ +E  EICC
Sbjct: 20  TCVCIPLGRLKKNGGDADAHDDD--GYNLVGVMFGDKEKEE--EICC 62


>At1g55560.1 68414.m06359 multi-copper oxidase type I family protein
           similar to pollen-specific BP10 protein
           [SP|Q00624][Brassica napus]; contains Pfam profile:
           PF00394 Multicopper oxidase
          Length = 549

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = -1

Query: 467 PFNFEGSGCGFGTGSVMGLVQQISRFSWQSSSPNLTSSTPHPVMLALLTSTPSLFLL 297
           P+ F      +GT S +G+ Q++   + Q   PNL S++ + V++ +       FLL
Sbjct: 24  PYFFHTWNVTYGTASPLGVPQKVILINGQFPGPNLNSTSNNNVVINVFNHLDEPFLL 80


>At3g13400.1 68416.m01685 multi-copper oxidase type I family protein
           similar to pollen-specific BP10 protein
           [SP|Q00624][Brassica napus]; contains Pfam profile:
           PF00394 Multicopper oxidase
          Length = 551

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = -1

Query: 437 FGTGSVMGLVQQISRFSWQSSSPNLTSSTPHPVMLALLTSTPSLFLL 297
           +GT + +G+ QQ+   + Q   PNL S++ + V++ +  +    FLL
Sbjct: 35  YGTAAPLGIPQQVILINGQFPGPNLNSTSNNNVVINVFNNLDEPFLL 81


>At1g55570.1 68414.m06360 multi-copper oxidase type I family protein
           nearly identical to pollen-specific BP10 protein
           [SP|Q00624][Brassica napus]; contains Multicopper
           oxidase domain PF00394
          Length = 555

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/47 (27%), Positives = 27/47 (57%)
 Frame = -1

Query: 437 FGTGSVMGLVQQISRFSWQSSSPNLTSSTPHPVMLALLTSTPSLFLL 297
           +GT S +G+ QQ+   + Q   PN+ S++ + V++ +  +    FL+
Sbjct: 37  YGTASPLGVPQQVILINGQFPGPNINSTSNNNVIVNVFNNLDEPFLI 83


>At3g13390.1 68416.m01684 multi-copper oxidase type I family protein
           nearly identical to pollen-specific BP10 protein
           [SP|Q00624][Brassica napus]; contains Multicopper
           oxidase domain PF00394
          Length = 554

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = -1

Query: 437 FGTGSVMGLVQQISRFSWQSSSPNLTSSTPHPVMLALLTSTPSLFLL 297
           +GT S +G+ QQ+   + Q   PN+ S++ + V++ +  +    FLL
Sbjct: 36  YGTVSPLGVPQQVILINGQFPGPNVNSTSNNNVIINVFNNLDEPFLL 82


>At4g17245.1 68417.m02593 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 166

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 403 CCTNPITEPVPKPQPD 450
           CC  P+ + VPKP PD
Sbjct: 60  CCLRPVLQHVPKPDPD 75


>At1g08400.1 68414.m00929 chromosome structural maintenance
           protein-related contains weak similarity to
           RAD50-interacting protein 1 [Homo sapiens]
           gi|11967435|gb|AAG42101
          Length = 804

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = -1

Query: 506 MVTPTPMGFL*PHPFNFEGSGCGFGTGSVMGLVQQISRFSWQSSSPNLTSSTPHPVMLAL 327
           M  P P+ F+ P+P    G   GF  G+ + L   + R S  +S+ N   S  +  +L L
Sbjct: 4   MEHPLPLSFVLPNPATLPGLALGFIDGNFVDLQDLLLRASTLTSNLNHDCSDLNDRLLHL 63

Query: 326 LT 321
            T
Sbjct: 64  RT 65


>At4g04920.1 68417.m00715 expressed protein 
          Length = 1250

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
 Frame = +2

Query: 173  APHAGEAGTGNLEDIIVKPTESNS------VFTVRTGNLANASPTICVTRTMKGWTLITP 334
            A HA  AGTG+  + +  PT++ S      VF  ++  LA   PT   T T    T  + 
Sbjct: 834  ASHAASAGTGSNRNNVTSPTQNASSPATPQVFPDKSLYLAVGQPTTTTTTTA---TTNSS 890

Query: 335  A*RGGECWMSGSAKK 379
                 + WM G+  K
Sbjct: 891  GSSHVQAWMQGAIAK 905


>At2g33835.1 68415.m04152 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 587

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 21/89 (23%), Positives = 41/89 (46%)
 Frame = +2

Query: 131 HDLRPCLASEHLRNAPHAGEAGTGNLEDIIVKPTESNSVFTVRTGNLANASPTICVTRTM 310
           H+ RP ++S    +   AG A TG+L   +     +++V     GN  + S ++    T+
Sbjct: 251 HEHRPSISSYLKTDMGSAGPAWTGSLSSSVPMNDRASTVGDFENGNSLSGSGSL---PTL 307

Query: 311 KGWTLITPA*RGGECWMSGSAKKTAKRTW 397
           +G  +   + +G E   + + KK +   W
Sbjct: 308 QG--VAVSSDKGAEANTTSTKKKVSSDDW 334


>At2g01440.1 68415.m00067 ATP-dependent DNA helicase, putative 
          Length = 953

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +3

Query: 381  LPREPGDLLH*SHNGTRAKAAAGPLEVEGMRLQEPH 488
            L R PGDLL    +G   +     LE++G  LQE H
Sbjct: 904  LLRGPGDLLGKKQSGHLPEFPVARLEIDGNMLQEAH 939


>At5g13260.1 68418.m01523 expressed protein
          Length = 537

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 579 RSKRPAEPQPRGTRRTEPPYPPFRDGNSDPHGVPVA 472
           RS  PA       R ++PP PP +  N   + +PVA
Sbjct: 129 RSSSPANSPAVSVRASQPPVPPSKLRNQTTNPLPVA 164


>At5g66230.1 68418.m08343 expressed protein
          Length = 329

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 545 ELAELSLRTHPSVMVTPTPMGFL*PHPFN 459
           +L ++SL + P + +  +PMG L P P N
Sbjct: 108 DLTKISLESRPFIHLVTSPMGLLAPTPAN 136


>At5g19270.1 68418.m02295 hypothetical protein
          Length = 365

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 19/54 (35%), Positives = 23/54 (42%)
 Frame = +3

Query: 378 RLPREPGDLLH*SHNGTRAKAAAGPLEVEGMRLQEPHGGRSYHHGRVGTEAQFG 539
           R  REP       HNG   K   GP  +      EP GG ++ + R   EAQ G
Sbjct: 305 RFRREPQGGPVRFHNGLLNKPQGGPAWLYNRFHNEPQGGPAWLYYRFCREAQAG 358


>At4g34440.1 68417.m04894 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 670

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -3

Query: 573 KRPAEPQPRGTRRTEPPYPPFRDGNSDP 490
           + P+ P P G+    PP PP    N  P
Sbjct: 88  ENPSPPAPEGSTPVTPPAPPQTPSNQSP 115


>At3g12350.1 68416.m01540 F-box family protein  ; similar to SKP1
           interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 422

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 132 TTLDPALLLNIFGTPPTPAKPARGTWK 212
           T  +P   L +    PTP +P +G WK
Sbjct: 251 TKWEPEHFLKVADCSPTPTRPLQGLWK 277


>At3g10550.1 68416.m01266 expressed protein
          Length = 634

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +1

Query: 379 DCQENLEICCTNPITEPVPKPQPDPSKLKGCGYR 480
           D   N  +C T P    +PK   D   L+ C +R
Sbjct: 20  DLNSNYNLCQTYPFAFMIPKSISDAELLQACSFR 53


>At1g25180.1 68414.m03127 hypothetical protein
          Length = 258

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = -3

Query: 597 LLQRTIRSKRPAEPQPRGTRRTEPPYPPFRDGNSDPHGVPVAASLQL 457
           L+   +RS  PA P     + T P YP  R  +S     P  A+ QL
Sbjct: 156 LVSSPLRSIPPAGPSQTARQLTRPKYPASRFVSSSSSAHPSQAARQL 202


>At1g25112.1 68414.m03120 hypothetical protein
          Length = 258

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = -3

Query: 597 LLQRTIRSKRPAEPQPRGTRRTEPPYPPFRDGNSDPHGVPVAASLQL 457
           L+   +RS  PA P     + T P YP  R  +S     P  A+ QL
Sbjct: 156 LVSSPLRSIPPAGPSQTARQLTRPKYPASRFVSSSSSAHPSQAARQL 202


>At1g25025.1 68414.m03116 hypothetical protein
          Length = 258

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = -3

Query: 597 LLQRTIRSKRPAEPQPRGTRRTEPPYPPFRDGNSDPHGVPVAASLQL 457
           L+   +RS  PA P     + T P YP  R  +S     P  A+ QL
Sbjct: 156 LVSSPLRSIPPAGPSQTARQLTRPKYPASRFVSSSSSAHPSQAARQL 202


>At1g24851.1 68414.m03110 hypothetical protein
          Length = 258

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = -3

Query: 597 LLQRTIRSKRPAEPQPRGTRRTEPPYPPFRDGNSDPHGVPVAASLQL 457
           L+   +RS  PA P     + T P YP  R  +S     P  A+ QL
Sbjct: 156 LVSSPLRSIPPAGPSQTARQLTRPKYPASRFVSSSSSAHPSQAARQL 202


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,028,196
Number of Sequences: 28952
Number of extensions: 360516
Number of successful extensions: 1368
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1362
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)