Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0499.Seq
(633 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 116 1e-26
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 110 8e-25
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 81 7e-16
SB_56| Best HMM Match : Actin (HMM E-Value=0) 81 7e-16
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 81 7e-16
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 81 1e-15
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 80 2e-15
SB_54| Best HMM Match : Actin (HMM E-Value=0) 77 2e-14
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 75 4e-14
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 75 6e-14
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 73 2e-13
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 68 7e-12
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 55 4e-08
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5) 38 0.009
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 35 0.048
SB_9110| Best HMM Match : DUF321 (HMM E-Value=4.5) 30 1.4
SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_52295| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_17436| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_43404| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_5284| Best HMM Match : CHASE3 (HMM E-Value=0.83) 28 5.5
SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_32741| Best HMM Match : Filament (HMM E-Value=0.39) 27 9.6
SB_15981| Best HMM Match : Defensin_2 (HMM E-Value=1.1) 27 9.6
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 116 bits (280), Expect = 1e-26
Identities = 49/71 (69%), Positives = 59/71 (83%)
Frame = +3
Query: 3 KVGDQSTRRMTKAVEDLDFFIGDEAFEATGYSVKYPVRHGIVEDWDLMERYIEQCVFKYL 182
KVG++S R K VEDLDFFIGDEA + Y+ K+P+RH IVEDWDLMER+ EQC+FKYL
Sbjct: 266 KVGNKSLGRSAKGVEDLDFFIGDEAIDKPSYATKWPIRHAIVEDWDLMERFWEQCIFKYL 325
Query: 183 RAEPEDHHFLM 215
RAEPEDH+FL+
Sbjct: 326 RAEPEDHYFLL 336
Score = 61.3 bits (142), Expect = 6e-10
Identities = 27/36 (75%), Positives = 30/36 (83%)
Frame = +2
Query: 311 AVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPV 418
AVLALAASW SR ERT TG V+DSGDGVTH++PV
Sbjct: 337 AVLALAASWTSRQVGERTLTGCVIDSGDGVTHVIPV 372
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 110 bits (265), Expect = 8e-25
Identities = 50/64 (78%), Positives = 56/64 (87%)
Frame = +2
Query: 302 AVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVAEGYVIGSCIKHIPIAGRNIT 481
A +AVLALAASW SR ERT TG V+DSGDGVTH++PVAEGYVIGSCIKHIPIAGR+IT
Sbjct: 40 ATKAVLALAASWTSRQVGERTLTGCVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDIT 99
Query: 482 SFIQ 493
F+Q
Sbjct: 100 FFVQ 103
Score = 78.2 bits (184), Expect = 5e-15
Identities = 32/52 (61%), Positives = 42/52 (80%)
Frame = +1
Query: 478 YFIYSIITP*REVGIPPEQSLETAKAIKAKYSYICPDIAKEFAKYDSDPGKW 633
+F+ ++ RE+GIPPEQS+ETAK IK ++ YICPDIAKEFAKY+ +P KW
Sbjct: 100 FFVQQLLRE-REMGIPPEQSMETAKTIKERWGYICPDIAKEFAKYEQEPAKW 150
Score = 45.2 bits (102), Expect = 4e-05
Identities = 20/34 (58%), Positives = 24/34 (70%)
Frame = +3
Query: 3 KVGDQSTRRMTKAVEDLDFFIGDEAFEATGYSVK 104
KVG++S R K VEDLDFFIGDEA + Y+ K
Sbjct: 9 KVGNKSLGRSAKGVEDLDFFIGDEAIDKPSYATK 42
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 81.0 bits (191), Expect = 7e-16
Identities = 38/79 (48%), Positives = 56/79 (70%)
Frame = +2
Query: 254 LAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVAEGYV 433
+ +IMFE+FN P +Y+A+QAVL+L AS ++ TGIV+DSGDGVTH VP+ EGY
Sbjct: 119 MTQIMFETFNSPAMYVAIQAVLSLYASGRT--------TGIVMDSGDGVTHTVPIYEGYA 170
Query: 434 IGSCIKHIPIAGRNITSFI 490
+ I + +AGR++T ++
Sbjct: 171 LPHAILRLDLAGRDLTDYL 189
Score = 67.7 bits (158), Expect = 7e-12
Identities = 31/67 (46%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Frame = +3
Query: 54 DFFIGDEAFEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPL 230
D ++GDEA G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PL
Sbjct: 51 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 110
Query: 231 NTPENRE 251
N NRE
Sbjct: 111 NPKANRE 117
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 81.0 bits (191), Expect = 7e-16
Identities = 38/79 (48%), Positives = 56/79 (70%)
Frame = +2
Query: 254 LAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVAEGYV 433
+ +IMFE+FN P +Y+A+QAVL+L AS ++ TGIV+DSGDGVTH VP+ EGY
Sbjct: 119 MTQIMFETFNSPAMYVAIQAVLSLYASGRT--------TGIVMDSGDGVTHTVPIYEGYA 170
Query: 434 IGSCIKHIPIAGRNITSFI 490
+ I + +AGR++T ++
Sbjct: 171 LPHAILRLDLAGRDLTDYL 189
Score = 67.7 bits (158), Expect = 7e-12
Identities = 31/67 (46%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Frame = +3
Query: 54 DFFIGDEAFEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPL 230
D ++GDEA G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PL
Sbjct: 51 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 110
Query: 231 NTPENRE 251
N NRE
Sbjct: 111 NPKANRE 117
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 81.0 bits (191), Expect = 7e-16
Identities = 38/79 (48%), Positives = 56/79 (70%)
Frame = +2
Query: 254 LAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVAEGYV 433
+ +IMFE+FN P +Y+A+QAVL+L AS ++ TGIV+DSGDGVTH VP+ EGY
Sbjct: 120 MTQIMFETFNSPAMYVAIQAVLSLYASGRT--------TGIVMDSGDGVTHTVPIYEGYA 171
Query: 434 IGSCIKHIPIAGRNITSFI 490
+ I + +AGR++T ++
Sbjct: 172 LPHAILRLDLAGRDLTDYL 190
Score = 67.7 bits (158), Expect = 7e-12
Identities = 31/67 (46%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Frame = +3
Query: 54 DFFIGDEAFEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPL 230
D ++GDEA G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PL
Sbjct: 52 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 111
Query: 231 NTPENRE 251
N NRE
Sbjct: 112 NPKANRE 118
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 80.6 bits (190), Expect = 1e-15
Identities = 38/79 (48%), Positives = 56/79 (70%)
Frame = +2
Query: 254 LAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVAEGYV 433
+ +IMFE+FN P +Y+A+QAVL+L AS ++ TGIV+DSGDGVTH VP+ EGY
Sbjct: 120 MTQIMFETFNSPAMYVAIQAVLSLYASGRT--------TGIVMDSGDGVTHTVPIYEGYA 171
Query: 434 IGSCIKHIPIAGRNITSFI 490
+ I + +AGR++T ++
Sbjct: 172 LPHAIIRLDLAGRDLTDYL 190
Score = 67.7 bits (158), Expect = 7e-12
Identities = 31/67 (46%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Frame = +3
Query: 54 DFFIGDEAFEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPL 230
D ++GDEA G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PL
Sbjct: 52 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 111
Query: 231 NTPENRE 251
N NRE
Sbjct: 112 NPKANRE 118
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 79.8 bits (188), Expect = 2e-15
Identities = 38/79 (48%), Positives = 56/79 (70%)
Frame = +2
Query: 254 LAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVAEGYV 433
+ +IMFE+FN P +Y+A+QAVL+L AS ++ TGIV+DSGDGVTH VP+ EGY
Sbjct: 82 MEKIMFETFNSPAMYVAIQAVLSLYASGRT--------TGIVMDSGDGVTHTVPIYEGYA 133
Query: 434 IGSCIKHIPIAGRNITSFI 490
+ I + +AGR++T ++
Sbjct: 134 LPHAIIRLDLAGRDLTDYL 152
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/34 (50%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Frame = +3
Query: 54 DFFIGDEAFEATGY-SVKYPVRHGIVEDWDLMER 152
D ++GDEA G ++KYP+ HGIV +WD ME+
Sbjct: 51 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEK 84
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 76.6 bits (180), Expect = 2e-14
Identities = 38/80 (47%), Positives = 55/80 (68%)
Frame = +2
Query: 254 LAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVAEGYV 433
+ ++MFESFNVP +Y+AVQAV+AL AS ++ TG V D GDGV+H VPV +GY
Sbjct: 2164 MVQLMFESFNVPCMYVAVQAVMALYASGRT--------TGTVFDCGDGVSHTVPVYDGYW 2215
Query: 434 IGSCIKHIPIAGRNITSFIQ 493
+ + I +AGR++T ++Q
Sbjct: 2216 LPHATQRIDLAGRDLTHYLQ 2235
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = +3
Query: 171 FKYLRAEPEDHHFLMTEPPLNTPENRE 251
F LR ED L+TE PLN NRE
Sbjct: 2136 FDQLRVRGEDFPVLLTEAPLNPKMNRE 2162
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 75.4 bits (177), Expect = 4e-14
Identities = 36/76 (47%), Positives = 53/76 (69%)
Frame = +2
Query: 263 IMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVAEGYVIGS 442
IMFE+FN P +Y+A+QAVL+L AS ++ TG+V DSGDGV+H VP+ EGY +
Sbjct: 1 IMFEAFNSPAVYVAIQAVLSLYASGRT--------TGVVFDSGDGVSHNVPIYEGYALPH 52
Query: 443 CIKHIPIAGRNITSFI 490
I + +AGR++T ++
Sbjct: 53 AILRLDLAGRDLTDYL 68
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 74.5 bits (175), Expect = 6e-14
Identities = 36/79 (45%), Positives = 52/79 (65%)
Frame = +2
Query: 254 LAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVAEGYV 433
+ E+MFE++ G+YIA+QAVL L A + TG+V+DSGDGVTHI PV EG+
Sbjct: 123 MIEVMFENYQFEGVYIAIQAVLTLYA--------QGLLTGVVIDSGDGVTHICPVYEGFA 174
Query: 434 IGSCIKHIPIAGRNITSFI 490
+ + + IAGR+IT ++
Sbjct: 175 LPHLTRRLDIAGRDITKYL 193
Score = 48.4 bits (110), Expect = 5e-06
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Frame = +3
Query: 42 VEDLDFFIGDEAFEATGY-SVKYPVRHGIVEDWDLMERYIEQCVF--KYLRAEPEDHHFL 212
+E D +GDEA + V YP+ +GIV +WD M +++ F + +P + L
Sbjct: 50 IEVKDLMVGDEASQLRYMLEVNYPMDNGIVRNWDDM-KHVWDYTFGESKMNIDPRNTKVL 108
Query: 213 MTEPPLNTPENRE 251
+TEPPLN +NRE
Sbjct: 109 LTEPPLNPMKNRE 121
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 72.9 bits (171), Expect = 2e-13
Identities = 35/85 (41%), Positives = 58/85 (68%)
Frame = +2
Query: 239 RKQRILAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPV 418
R + AE+ FE+FNVP L+I++QAVL+L A+ ++ TG+V+D+GDGV+H VP+
Sbjct: 140 RNREKAAEVFFETFNVPALFISMQAVLSLYATGRT--------TGVVLDAGDGVSHSVPI 191
Query: 419 AEGYVIGSCIKHIPIAGRNITSFIQ 493
EG+ + I IAGR+++ +++
Sbjct: 192 YEGFAMPHSIMRTDIAGRDVSRYLR 216
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 67.7 bits (158), Expect = 7e-12
Identities = 31/67 (46%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Frame = +3
Query: 54 DFFIGDEAFEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPL 230
D ++GDEA G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PL
Sbjct: 52 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 111
Query: 231 NTPENRE 251
N NRE
Sbjct: 112 NPKANRE 118
Score = 61.3 bits (142), Expect = 6e-10
Identities = 30/57 (52%), Positives = 42/57 (73%)
Frame = +2
Query: 254 LAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVAE 424
+ +IMFE+FN P +Y+A+QAVL+L AS ++ TGIV+DSGDGV+H VP+ E
Sbjct: 120 MTQIMFETFNSPAMYVAIQAVLSLYASGRT--------TGIVMDSGDGVSHTVPIYE 168
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 55.2 bits (127), Expect = 4e-08
Identities = 31/81 (38%), Positives = 45/81 (55%)
Frame = +2
Query: 242 KQRILAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVA 421
K+ L E+MFE +NVP ++ +VL A+ +S G+V+DSG T VPV
Sbjct: 48 KREKLTELMFEKYNVPAFFLCKNSVLTAFANGRSN--------GLVIDSGATQTSAVPVH 99
Query: 422 EGYVIGSCIKHIPIAGRNITS 484
+GYV+ I P+AG IT+
Sbjct: 100 DGYVLQQAIVRSPLAGDFITA 120
Score = 42.3 bits (95), Expect = 3e-04
Identities = 17/48 (35%), Positives = 29/48 (60%)
Frame = +3
Query: 108 PVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENRE 251
P++ G++EDWDL E+ ++ K ++++ H LM+E NT RE
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKRE 50
>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
Length = 612
Score = 37.5 bits (83), Expect = 0.009
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Frame = +1
Query: 367 HWHRSRQRR-WRYSH-CSSCR-RICYWIMYKTHPYCW*KHYFIY 489
H H++R R +R+ H C C R CY Y+ H YCW +H++ Y
Sbjct: 7 HRHQNRHNRCYRHHHYCCYCHHRYCY---YRHHHYCWYRHHYHY 47
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 35.1 bits (77), Expect = 0.048
Identities = 22/64 (34%), Positives = 30/64 (46%)
Frame = +2
Query: 260 EIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVAEGYVIG 439
EI+FE +N L A L+ + S +VVD+G THIVPV G VI
Sbjct: 323 EILFEEYNFKALSRTTAAQLSAYKCHQDMVSKNPVC--LVVDTGYSFTHIVPVFNGKVIK 380
Query: 440 SCIK 451
++
Sbjct: 381 KAVR 384
>SB_9110| Best HMM Match : DUF321 (HMM E-Value=4.5)
Length = 199
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +1
Query: 367 HWHRSRQRRWRYSHCSSCRRICYWIMYKTH 456
H H SR R+WR H + RRI W +Y H
Sbjct: 126 HDHNSRVRKWRVYH-NHNRRIRKWRVYHNH 154
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 367 HWHRSRQRRWRYSHCSSCRRICYWIMYKTH 456
H H SR R+WR + +C RI W +Y H
Sbjct: 100 HGHNSRIRKWRVYYNHNC-RIRKWRVYHDH 128
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 367 HWHRSRQRRWRYSHCSSCRRICYWIMYKTH 456
H H R R+WR H +C RI W +Y H
Sbjct: 139 HNHNRRIRKWRVYHNHNC-RIRKWRVYHDH 167
>SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1913
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = -2
Query: 248 SVFWSVERRLGH*EMMIFGFRTEILKHALFDVPFH*IPVFYDTVAHRILYRVSCGFKSF 72
SVF +R+ I+ ++I H DVP +PVF D + R Y ++ G K +
Sbjct: 70 SVFRRPRKRVDSFSHAIYEAASKIFLHLKGDVPSSQLPVFDDDLERRRAYSMAFGAKRY 128
>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6753
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 107 SCAPRYRRRLGFNGKVHRTVRV*VSPCGTRRSSFLN 214
+C PRYR GFN + RTV V PC S ++
Sbjct: 2331 TCTPRYR---GFNCTILRTVCTDVQPCDKGNCSMIS 2363
>SB_52295| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1325
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -2
Query: 131 FYDTVAHRILYRVSCGFKSFIT--DEKIQIFDSLSHPPSTLIA 9
F T I Y + C F +F D K IFD SHP +++A
Sbjct: 1192 FDSTDYQPIEYNIDCKFDTFSATIDVKKTIFDLQSHPTDSIVA 1234
>SB_17436| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 718
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = +2
Query: 242 KQRILAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVA 421
K+ + I ++S ++ Y V+ V+ A T A +T VDSG+GV ++P A
Sbjct: 647 KEDVAHHIGWKSTSMVDHYTQVEKVMGAAPD----TDAAQTLASSTVDSGEGVPALLPGA 702
Query: 422 E 424
+
Sbjct: 703 Q 703
>SB_43404| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 522
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Frame = +3
Query: 78 FEATGYSVKYPVRHGIVEDWDLMERYIE----QCVFKYLRAEPEDHHFLMTEPPLNTPEN 245
FE T Y++ VR + W + E + + + +F+Y + + + +LMT+ P+ +P+
Sbjct: 152 FELTYYALFPGVR--TISPWRMPEFFEKFKGRKELFEYAKTQAPEDIYLMTKNPITSPDK 209
Query: 246 REY*PKSCLSH 278
P C H
Sbjct: 210 VSSLPLRCYYH 220
>SB_5284| Best HMM Match : CHASE3 (HMM E-Value=0.83)
Length = 957
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +2
Query: 371 GIVVDSGDGVTHIVPVAEGYVIGSCIKHIPIAG 469
G+V+++GD V +VP+A V+G +PIAG
Sbjct: 776 GVVLNAGDVVLGVVPIAGDVVLGV----VPIAG 804
>SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2956
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = +1
Query: 304 CTSRSCFGCVMEVTYVC*THLHWHRSRQRRWRYSHCSSCRRI 429
C S F V+E Y+C HW +R +H C R+
Sbjct: 2549 CNSGYGFSTVVEKMYMCSVSDHWIHARMSVDGLAHFPDCSRV 2590
>SB_32741| Best HMM Match : Filament (HMM E-Value=0.39)
Length = 1814
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +3
Query: 36 KAVEDLDFFIGDEAFEATGYSVKYPVRHGIVEDWDLMERYI--EQCVFKYLRAEP 194
+A+ +L+ + F T YS + I++DW + + QC+ + L+ P
Sbjct: 1270 EALRELELWGAGAVFSLTSYSDSHEKELSIIKDWKELVNQVGDNQCLLQSLKDSP 1324
>SB_15981| Best HMM Match : Defensin_2 (HMM E-Value=1.1)
Length = 890
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +3
Query: 81 EATGYSVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHF 209
E + S+ R G++E W +M Y Q + R ED HF
Sbjct: 497 ETSSDSIPRSPRRGMLEFWLVMRIYDNQVDIYFHRRNSEDWHF 539
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,472,421
Number of Sequences: 59808
Number of extensions: 400153
Number of successful extensions: 1061
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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