Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0498.Seq
         (680 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   2.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.2  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   6.2  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   8.2  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 550 TLITNPEYSSKYLR 591
           T I N  YSSKY+R
Sbjct: 199 TYIVNTNYSSKYMR 212


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 247 SNPDIVLVGGSTRIPKVQKLLQDFFNGKELN 339
           SNPDI +  G+  I  +QK  + ++  + +N
Sbjct: 729 SNPDISVEDGTLSINNIQKTNEGYYLCEAVN 759


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 463  GIETAGGVMTTLIKRTLPSPLNRLRHSPP 549
            G +  G V +     T PSP  R R++PP
Sbjct: 972  GCQPGGVVQSQQPIMTDPSPFKRGRYTPP 1000


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 264 YNIGI*ALSILASRRDFSTGSMVD 193
           YN+ +   SIL  + D +T  +VD
Sbjct: 104 YNVAVPTKSILEKKPDVTTVELVD 127


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +1

Query: 256 DIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDE 360
           D ++VGG      V   L +  N K L     PDE
Sbjct: 70  DFIVVGGGAARAVVAGRLSEVSNWKVLLLEAGPDE 104


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -2

Query: 667 PRGAGGIPVS 638
           PRG GG+P S
Sbjct: 399 PRGPGGVPTS 408


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,406
Number of Sequences: 438
Number of extensions: 3811
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)