Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0497.Seq
         (595 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    25   0.64 
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    22   4.5  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    21   7.8  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    21   7.8  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 24.6 bits (51), Expect = 0.64
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 458 RNNFSIRYWSWNYRGCW 508
           R+NF   +  WNY  CW
Sbjct: 746 RHNFKGLHLDWNYPVCW 762



 Score = 21.0 bits (42), Expect = 7.8
 Identities = 7/21 (33%), Positives = 8/21 (38%)
 Frame = +2

Query: 446  ELFNRNNFSIRYWSWNYRGCW 508
            +    NNF      W Y  CW
Sbjct: 1930 DFIETNNFDGLDLDWEYPKCW 1950


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 567 NRNEYTLNILPRNN 526
           NR+EY +   PRNN
Sbjct: 397 NRDEYNVCFRPRNN 410


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -3

Query: 197 FYFVGFQNSEVMINRDNWVYSY 132
           +Y     NSE  IN  N+V  Y
Sbjct: 360 YYNKNHPNSENYINHQNYVQGY 381


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -3

Query: 197 FYFVGFQNSEVMINRDNWVYSY 132
           +Y     NSE  IN  N+V  Y
Sbjct: 308 YYNKNHPNSENYINHQNYVQGY 329


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,833
Number of Sequences: 336
Number of extensions: 2477
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14935063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)