Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0497.Seq
(595 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 28 0.89
SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism... 28 0.89
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz... 26 3.6
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 26 3.6
SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ... 26 3.6
SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe... 26 4.8
SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P... 25 6.3
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p... 25 6.3
SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 8.3
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa... 25 8.3
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1530
Score = 28.3 bits (60), Expect = 0.89
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +1
Query: 52 IDENTFGKCFR*SSSCDDPRIIPLTSQYEYTQLSLLIITSE 174
I E+T + R S++ P +PL+ +YEY + + ++ E
Sbjct: 969 IGESTVREALRFSAALRQPASVPLSEKYEYVESVIKLLEME 1009
>SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 28.3 bits (60), Expect = 0.89
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Frame = +3
Query: 93 VLRRSKNYTSNVAIRIHPVIPINHYLGVLKTNKIEPRSYSIIPCTK--YSSSIFSPFEHS 266
VL+ +K + + +HP +P YL K +I +YS + Y+S I EH
Sbjct: 176 VLKIAKVKPTIHQMELHPYLPQTEYLEKHKKLQIHVSAYSPLANQNDAYNSDISKLIEHK 235
Query: 267 NLFKVKLSAHXXXSPKSTAIGF 332
L + + +P + AI +
Sbjct: 236 TLVDIANARGEGITPANIAISW 257
>SPBC354.05c |sre2||membrane-tethered transcription factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 793
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +3
Query: 90 FVLRRSKNYTSNVAIRIHPVIPINHYLGVLK-TNKIEPRSYSIIPCTKY 233
F ++ S + +++++I HP +PINH K N+ + +P TK+
Sbjct: 149 FEVKNSLHDSTDLSITHHPHLPINHQGNTWKHANESLQSNQGPVPNTKF 197
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -3
Query: 149 NWVYSYCDVRGIILGSSQDELQRKHLPKVFSSIKNE 42
NW + ++G+I SSQ E +L KV SI +E
Sbjct: 123 NWNDFFASLQGVIAASSQSEFSNFYL-KVLLSIGDE 157
>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/57 (24%), Positives = 25/57 (43%)
Frame = +3
Query: 117 TSNVAIRIHPVIPINHYLGVLKTNKIEPRSYSIIPCTKYSSSIFSPFEHSNLFKVKL 287
T +++ +P + G+ +P I C KY S+ +S HS L ++L
Sbjct: 208 TRKFLVKLAKALPDAKFFGIFDW---DPHGLCIYSCFKYGSNAYSHEPHSQLRNLQL 261
>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 319
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = -3
Query: 182 FQNSEVMINRDNWVYSYCDVRGIILGSSQDELQRKHLPKVFSSIKNE 42
F N+E ++NR W V G+ +G + + + ++ ++ IKNE
Sbjct: 99 FCNNEGLLNRQEWFEHSFHVHGLNIGLADNIV---YINRLLEKIKNE 142
>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +3
Query: 186 NKIEPRSYSIIPCTKYSSSIFSPFEH 263
N ++P+S +++P T + SI SP ++
Sbjct: 29 NPVKPQSSNVVPGTSHIGSIKSPADY 54
>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 669
Score = 25.4 bits (53), Expect = 6.3
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +3
Query: 111 NYTSNVAIRIHPVIPINHYLGVLKTNKIEPRSYSIIPCTKYSSSIFSPFEHSNLFKVKLS 290
N+ VA+R++P + ++ G+ T I T+ SSSI HSN V+L
Sbjct: 501 NHLDPVAMRLNPTVDLSFSKGIHPTR---------ILFTRKSSSILRMISHSNTDPVELR 551
Query: 291 AH 296
++
Sbjct: 552 SY 553
>SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 104
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 425 AAHKCNYELFNRNNFSIRYWSWNYR 499
AA KC +E FSI + S+N++
Sbjct: 73 AASKCEFEKIWSTTFSISFLSFNFK 97
>SPAC32A11.03c |phx1||homeobox transcription factor
Phx1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 25.0 bits (52), Expect = 8.3
Identities = 17/57 (29%), Positives = 23/57 (40%)
Frame = +3
Query: 150 IPINHYLGVLKTNKIEPRSYSIIPCTKYSSSIFSPFEHSNLFKVKLSAHXXXSPKST 320
IPI L N + P + + KYS+S +S N V A SP S+
Sbjct: 311 IPIRQSLSSTYYNSLSPNAVPVSSQRKYSASSYSAI--PNAMSVSNQAFDVESPPSS 365
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,215,888
Number of Sequences: 5004
Number of extensions: 41305
Number of successful extensions: 106
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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