Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0497.Seq
(595 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 4e-10
SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 5e-08
SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 5e-08
SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 5e-08
SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 5e-08
SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 2e-07
SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 6e-06
SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.014
SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.014
SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.019
SB_48146| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_54812| Best HMM Match : 7tm_1 (HMM E-Value=0) 27 8.6
SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
>SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 61.7 bits (143), Expect = 4e-10
Identities = 30/37 (81%), Positives = 31/37 (83%)
Frame = -2
Query: 111 SWIVARRTSAKAFAKGVFINQERKLEVRRRLDTALVL 1
SWI RRT+AKAFAK VFINQERKLE RRR DT LVL
Sbjct: 4 SWIYERRTTAKAFAKNVFINQERKLEDRRRSDTVLVL 40
>SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 54.8 bits (126), Expect = 5e-08
Identities = 27/32 (84%), Positives = 28/32 (87%)
Frame = -2
Query: 96 RRTSAKAFAKGVFINQERKLEVRRRLDTALVL 1
RRT+AKAFAK VFINQERKLE RRR DT LVL
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVL 40
>SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 54.8 bits (126), Expect = 5e-08
Identities = 27/32 (84%), Positives = 28/32 (87%)
Frame = -2
Query: 96 RRTSAKAFAKGVFINQERKLEVRRRLDTALVL 1
RRT+AKAFAK VFINQERKLE RRR DT LVL
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVL 40
>SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 54.8 bits (126), Expect = 5e-08
Identities = 27/32 (84%), Positives = 28/32 (87%)
Frame = -2
Query: 96 RRTSAKAFAKGVFINQERKLEVRRRLDTALVL 1
RRT+AKAFAK VFINQERKLE RRR DT LVL
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVL 40
>SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 48
Score = 54.8 bits (126), Expect = 5e-08
Identities = 27/32 (84%), Positives = 28/32 (87%)
Frame = -2
Query: 96 RRTSAKAFAKGVFINQERKLEVRRRLDTALVL 1
RRT+AKAFAK VFINQERKLE RRR DT LVL
Sbjct: 11 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVL 42
>SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 65
Score = 52.8 bits (121), Expect = 2e-07
Identities = 26/31 (83%), Positives = 27/31 (87%)
Frame = -2
Query: 93 RTSAKAFAKGVFINQERKLEVRRRLDTALVL 1
RT+AKAFAK VFINQERKLE RRR DT LVL
Sbjct: 29 RTTAKAFAKNVFINQERKLEDRRRSDTVLVL 59
>SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 48.0 bits (109), Expect = 6e-06
Identities = 23/27 (85%), Positives = 24/27 (88%)
Frame = -2
Query: 93 RTSAKAFAKGVFINQERKLEVRRRLDT 13
RT+AKAFAK VFINQERKLE RRR DT
Sbjct: 2 RTTAKAFAKNVFINQERKLEDRRRSDT 28
>SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/33 (66%), Positives = 26/33 (78%), Gaps = 1/33 (3%)
Frame = -2
Query: 96 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVL 1
R+T+ ++ AK VFINQERKLE RRR DT LVL
Sbjct: 8 RKTNYCESIAKNVFINQERKLEDRRRSDTVLVL 40
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 112 FLDRRKTNFSESICQRCFHQSRTKV 38
FLD RKTN+ ESI + F K+
Sbjct: 4 FLDLRKTNYCESIAKNVFINQERKL 28
>SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/33 (60%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
Frame = -2
Query: 96 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVL 1
R+T+ ++ + VFINQERKLE RRR DT LVL
Sbjct: 8 RKTNYCESICQDVFINQERKLEDRRRSDTVLVL 40
Score = 31.9 bits (69), Expect = 0.40
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -1
Query: 112 FLDRRKTNFSESICQRCFHQSRTKV 38
FLD RKTN+ ESICQ F K+
Sbjct: 4 FLDLRKTNYCESICQDVFINQERKL 28
>SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 36.7 bits (81), Expect = 0.014
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = -1
Query: 112 FLDRRKTNFSESICQRCFHQSRTKV 38
FLD RKTN+ ESICQ CF K+
Sbjct: 4 FLDLRKTNYCESICQECFINQERKL 28
Score = 36.3 bits (80), Expect = 0.019
Identities = 19/33 (57%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Frame = -2
Query: 96 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVL 1
R+T+ ++ + FINQERKLE RRR DT LVL
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLVL 40
>SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 36.7 bits (81), Expect = 0.014
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = -1
Query: 112 FLDRRKTNFSESICQRCFHQSRTKV 38
FLD RKTN+ ESICQ CF K+
Sbjct: 4 FLDLRKTNYCESICQECFINQERKL 28
Score = 36.3 bits (80), Expect = 0.019
Identities = 19/33 (57%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Frame = -2
Query: 96 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVL 1
R+T+ ++ + FINQERKLE RRR DT LVL
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLVL 40
>SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 36.3 bits (80), Expect = 0.019
Identities = 19/33 (57%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Frame = -2
Query: 96 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVL 1
R+T+ ++ + FINQERKLE RRR DT LVL
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLVL 40
Score = 31.1 bits (67), Expect = 0.70
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -1
Query: 100 RKTNFSESICQRCFHQSRTKV 38
RKTN+ ESICQ CF K+
Sbjct: 8 RKTNYCESICQECFINQERKL 28
>SB_48146| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 810
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = +3
Query: 111 NYTSNVAIRIHPVIPINHYLGVLKTNKIEPRSYSIIPC 224
N ++ + R+H IP ++YL + N + ++ PC
Sbjct: 637 NRSALIGKRLHSPIPADYYLNAICRNTVNMKTRGFYPC 674
>SB_54812| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 392
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +2
Query: 338 LNRRFLERR---LTDDMLRKRVSITADACTDSAAHKCNYELFNRNNFSI 475
L R+L+R + +D L K+ D DS C++ FNR++ I
Sbjct: 341 LPNRYLQRMHKSVLNDRLAKKTGKRPDTEVDSKRSNCSHATFNRDSLKI 389
>SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1024
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/39 (25%), Positives = 21/39 (53%)
Frame = +3
Query: 180 KTNKIEPRSYSIIPCTKYSSSIFSPFEHSNLFKVKLSAH 296
K + ++ Y+ + +S F FEH+N ++KL+ +
Sbjct: 725 KNHSVDKHDYNNVTPLLFSQERFERFEHNNSLEIKLTVN 763
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,620,168
Number of Sequences: 59808
Number of extensions: 313284
Number of successful extensions: 607
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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