Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0497.Seq
         (595 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical pr...    27   7.6  
AL023822-1|CAD21649.1|  672|Caenorhabditis elegans Hypothetical ...    27   7.6  
AL021572-3|CAA16517.2|  672|Caenorhabditis elegans Hypothetical ...    27   7.6  

>Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical
           protein R13H4.8 protein.
          Length = 212

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -3

Query: 464 CCG*KARSCICAPRCRC 414
           CCG     C C PRC C
Sbjct: 79  CCGCGCGCCCCRPRCCC 95


>AL023822-1|CAD21649.1|  672|Caenorhabditis elegans Hypothetical
           protein W06H3.3 protein.
          Length = 672

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 156 INHYLGVL-KTNKIEPRSYSIIPCTKYSSSIFSPFEHSNLF 275
           I+  LGVL K N  +  +  I P     +  FSP+EH  +F
Sbjct: 25  ISSSLGVLLKNNGYKVSAIKIDPYLNEDAGTFSPYEHGEVF 65


>AL021572-3|CAA16517.2|  672|Caenorhabditis elegans Hypothetical
           protein W06H3.3 protein.
          Length = 672

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 156 INHYLGVL-KTNKIEPRSYSIIPCTKYSSSIFSPFEHSNLF 275
           I+  LGVL K N  +  +  I P     +  FSP+EH  +F
Sbjct: 25  ISSSLGVLLKNNGYKVSAIKIDPYLNEDAGTFSPYEHGEVF 65


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,359,892
Number of Sequences: 27780
Number of extensions: 235874
Number of successful extensions: 561
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)