Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0497.Seq
         (595 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    25   0.56 
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    25   0.56 
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   3.0  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   6.9  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    21   6.9  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    21   6.9  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    21   6.9  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    21   6.9  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    21   6.9  

>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 25.0 bits (52), Expect = 0.56
 Identities = 9/15 (60%), Positives = 14/15 (93%)
 Frame = -3

Query: 593 DPGLLRGLVIGMSTL 549
           DPGL+ G+VIG+++L
Sbjct: 129 DPGLVAGIVIGVTSL 143


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 25.0 bits (52), Expect = 0.56
 Identities = 9/15 (60%), Positives = 14/15 (93%)
 Frame = -3

Query: 593 DPGLLRGLVIGMSTL 549
           DPGL+ G+VIG+++L
Sbjct: 100 DPGLVAGIVIGVTSL 114


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 197 TEIIFDYSMHEIF 235
           TE  +DYS++EIF
Sbjct: 354 TEASYDYSLYEIF 366


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 144 PVIPINHYLGVLKTNKIEPRSYSIIPCTKYSSSIFSPFEHS 266
           P   +N      KT  I  R++ ++    YS+S F+P  +S
Sbjct: 287 PFFCVNIVTSYCKTC-ISGRAFQVLTWLGYSNSAFNPIIYS 326


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +2

Query: 422 SAAHKCNYELFNRNNFSIRYWSWNY 496
           S ++  NY  +N NN+    ++ NY
Sbjct: 84  SLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +2

Query: 422 SAAHKCNYELFNRNNFSIRYWSWNY 496
           S ++  NY  +N NN+    ++ NY
Sbjct: 84  SLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +2

Query: 422 SAAHKCNYELFNRNNFSIRYWSWNY 496
           S ++  NY  +N NN+    ++ NY
Sbjct: 84  SLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +2

Query: 422 SAAHKCNYELFNRNNFSIRYWSWNY 496
           S ++  NY  +N NN+    ++ NY
Sbjct: 84  SLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +2

Query: 422 SAAHKCNYELFNRNNFSIRYWSWNY 496
           S ++  NY  +N NN+    ++ NY
Sbjct: 84  SLSNNYNYSNYNNNNYKQLCYNINY 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,308
Number of Sequences: 438
Number of extensions: 3451
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)