Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0496.Seq
         (751 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O96078 Cluster: EFPDE4; n=1; Ephydatia fluviatilis|Rep:...    34   4.3  
UniRef50_Q64WD5 Cluster: Putative capsular polysaccharide polyme...    33   5.7  

>UniRef50_O96078 Cluster: EFPDE4; n=1; Ephydatia fluviatilis|Rep:
           EFPDE4 - Ephydatia fluviatilis
          Length = 698

 Score = 33.9 bits (74), Expect = 4.3
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +1

Query: 100 FHQIKKRSLFAALSIIYIVFLNRVSTISSK 189
           +H  K R LF+ + I+  VFLN +STI SK
Sbjct: 379 YHVFKARDLFSEMKIVPSVFLNFISTIESK 408


>UniRef50_Q64WD5 Cluster: Putative capsular polysaccharide
           polymerase; n=1; Bacteroides fragilis|Rep: Putative
           capsular polysaccharide polymerase - Bacteroides
           fragilis
          Length = 345

 Score = 33.5 bits (73), Expect = 5.7
 Identities = 13/30 (43%), Positives = 23/30 (76%)
 Frame = +1

Query: 124 LFAALSIIYIVFLNRVSTISSKLIL*NAKL 213
           +FA +SI++I+F N++++  SKLI+ N  L
Sbjct: 228 IFAGISILFIIFWNKLNSFKSKLIMENMNL 257


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 669,028,916
Number of Sequences: 1657284
Number of extensions: 12738366
Number of successful extensions: 24356
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24352
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61734884250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)