Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0496.Seq
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo...    29   0.71 
SPCC965.11c |||amino acid transporter |Schizosaccharomyces pombe...    29   0.71 
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2...    26   6.6  
SPAC24C9.09 |||mitochondrial threonine-tRNA ligase|Schizosacchar...    26   6.6  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   8.7  

>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 432

 Score = 29.1 bits (62), Expect = 0.71
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 88  KCECDIPVCLMLYYGIKYPH 29
           KC+C+ P+  + Y  I+YPH
Sbjct: 41  KCQCENPMAAITYADIEYPH 60


>SPCC965.11c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 537

 Score = 29.1 bits (62), Expect = 0.71
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -3

Query: 617 TLKGRCSCSLFTLHWHHRILKITAVIIFTCAFLFHLGDYCNDDSLF 480
           TLK   + ++    W+H    + AVI+ TC    + G Y    SL+
Sbjct: 298 TLKSPMTIAIMNAGWNHAGDFVNAVILITCLSSINSGIYIGSRSLY 343


>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
           Mei2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 750

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 16/60 (26%), Positives = 30/60 (50%)
 Frame = -3

Query: 287 EELFPFGKETVSGL*AVIFSYTINCNLAFYNINLEEIVETRFRNTIYIMESAANSDLFFI 108
           + +  FGK  V     V  S  I C++++ NI  ++ +  +FRN+  + E+ A     F+
Sbjct: 651 QSIITFGKARVGTQWNVFHSEKI-CDISYANIQGKDRLIEKFRNSCVMDENPAYRPKIFV 709


>SPAC24C9.09 |||mitochondrial threonine-tRNA
           ligase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 473

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
 Frame = +1

Query: 583 VNRLQLHRPFNVMCNEDDPH------TPSLPLLTSIDKPETLTCSTNSLTILQKLNTTT 741
           + + QLH PF   CN  + +      TP      ++ +PE+      ++   QKL TT+
Sbjct: 3   LKKFQLHTPFAHSCNRVEIYTARFGPTPFSTKANNLKQPESTLNDHRTIAARQKLYTTS 61


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
 Frame = -3

Query: 233  FSYTINCNLAFYNINLEEIVETRFR----NTIYIMESAANSD 120
            F   I CN+ + N++LEE     F+    N +Y  + +A+SD
Sbjct: 4078 FGTKILCNILYRNVHLEEFSWGTFKDLLLNVVYGPKVSASSD 4119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,873,152
Number of Sequences: 5004
Number of extensions: 57604
Number of successful extensions: 104
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)