Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0496.Seq
         (751 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0945 - 7973736-7974275,7974446-7974580                           29   3.9  
08_01_0958 + 9532423-9533202                                           29   5.2  
11_08_0006 - 27548581-27549177                                         28   9.1  
10_08_0253 - 16196275-16196307,16196425-16196550,16196643-161967...    28   9.1  

>07_01_0945 - 7973736-7974275,7974446-7974580
          Length = 224

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +1

Query: 622 CNEDD-PHTPSLPLLTSIDKPETLTCSTNSLTI 717
           C +DD P + +  ++TSIDKP T   ST  +TI
Sbjct: 93  CGDDDTPVSRNGSVVTSIDKPATAAASTPLVTI 125


>08_01_0958 + 9532423-9533202
          Length = 259

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -1

Query: 649 LGCEGRLHYT*H*KGDAAAAYSHCIGIIV 563
           LGC  RLH   H  GDAAA    C G ++
Sbjct: 16  LGCMLRLHVVEHPTGDAAAVAFQCDGCML 44


>11_08_0006 - 27548581-27549177
          Length = 198

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +1

Query: 634 DPHTPSLPLLTSIDKPETLTCSTNSLT 714
           +P TPS PLLTS+    +L+ ST  LT
Sbjct: 27  NPPTPSPPLLTSLIASNSLSPSTQLLT 53


>10_08_0253 - 16196275-16196307,16196425-16196550,16196643-16196741,
            16196822-16197001,16197090-16197371,16197471-16199141,
            16199257-16199463,16199566-16199700,16199792-16200082,
            16200403-16200621,16200876-16201034,16201120-16201181,
            16201257-16201383,16201460-16201693,16201777-16202003,
            16202163-16202257,16202341-16202468,16202574-16202594,
            16202765-16202921,16203007-16203075,16203228-16203341,
            16203415-16203491,16203576-16203688,16204432-16204507,
            16204592-16204756,16204825-16204952,16205049-16205130,
            16205426-16205548,16205633-16205860,16205933-16206034,
            16206144-16206341,16206581-16206760,16206868-16207020,
            16207690-16207797,16208201-16208355,16208786-16208912,
            16209825-16209914,16209986-16210127,16210303-16210379,
            16210467-16210582,16210638-16210773,16211130-16211198,
            16211279-16211361,16211655-16211720,16211788-16211974,
            16212054-16213547,16213635-16214165,16214234-16214363,
            16214407-16215878,16216359-16216364,16216750-16217055,
            16217364-16217468,16217577-16217772,16217862-16217929,
            16218853-16220631,16221026-16221151,16221604-16221780,
            16221997-16222128,16223461-16223498,16223710-16223788,
            16224175-16224284,16224787-16224935,16225027-16225197,
            16225281-16225552,16226355-16226442,16227942-16228369
          Length = 5157

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -2

Query: 648  WGVRVVFITHD--IKRAMQLQPIHIALASSYLKNYCGYHIYM 529
            W +   + T D   K A++   +H+ +ASS L+ +  YH ++
Sbjct: 2788 WWIHHAWATVDNAYKLALECSAVHVKVASSILEMWYNYHTFL 2829


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,932,596
Number of Sequences: 37544
Number of extensions: 355345
Number of successful extensions: 570
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)