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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0496.Seq
         (751 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37448| Best HMM Match : Mpv17_PMP22 (HMM E-Value=3.6e-05)           28   7.0  
SB_39521| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_28301| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  
SB_51986| Best HMM Match : HLH (HMM E-Value=0.15)                      28   9.3  

>SB_37448| Best HMM Match : Mpv17_PMP22 (HMM E-Value=3.6e-05)
          Length = 101

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = +2

Query: 26  LVRIFYSIIQHKTNRNVTFAFSLYFFIK*KKDRYSPHSP*YILYF*IV 169
           LV  FY+ ++H   R V F+ +   FI    DR     P Y+L+F IV
Sbjct: 8   LVHYFYNYLEHFVPRGVPFSKAKKLFI----DRLIFSPPFYLLFFYIV 51


>SB_39521| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 94

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 583 HCIGIIVS*KLLRLSYLHVHFSFILATIVMMIVYFY 476
           H I II++     LS+ H H   I+  I+  I++FY
Sbjct: 16  HIIAIIINKLSSSLSHYHHHHYIIIIIILTSIIHFY 51


>SB_28301| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
 Frame = +2

Query: 377 RSITTSRFIKR---EPPSGPF-PNVEYITA*TT*LTSIKINYHHYNSRQDEREMH 529
           R+ TT R   +   + P+ P  P+   +TA TT LTS  +   HYNSR     +H
Sbjct: 55  RATTTQRIAGKHSEKTPAAPQQPHYNNLTA-TTLLTSAALQQPHYNSRTATTALH 108


>SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1671

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +2

Query: 302 CFYLIHFTPKLKLNLGSP*KLDCKCRSITTSRFIKREPPSG 424
           C + + F  K KL    P K++CK R  T     K  PPSG
Sbjct: 627 CPFNLKFDTK-KLECEWPNKVNCKSRPTTVPYVTKPTPPSG 666


>SB_51986| Best HMM Match : HLH (HMM E-Value=0.15)
          Length = 2110

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 17/52 (32%), Positives = 29/52 (55%)
 Frame = +1

Query: 571 CQCNVNRLQLHRPFNVMCNEDDPHTPSLPLLTSIDKPETLTCSTNSLTILQK 726
           CQ  + RL+  + F V  N + P+T S P   S    ++++ +TNS + LQ+
Sbjct: 265 CQ-TMFRLKKKKKFRVADNVEMPNTVSFPFTGSSGVSKSVSHATNSRSDLQR 315


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,482,958
Number of Sequences: 59808
Number of extensions: 423029
Number of successful extensions: 691
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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