BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= pg--0496.Seq (751 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_37448| Best HMM Match : Mpv17_PMP22 (HMM E-Value=3.6e-05) 28 7.0 SB_39521| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0 SB_28301| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0 SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3 SB_51986| Best HMM Match : HLH (HMM E-Value=0.15) 28 9.3 >SB_37448| Best HMM Match : Mpv17_PMP22 (HMM E-Value=3.6e-05) Length = 101 Score = 28.3 bits (60), Expect = 7.0 Identities = 18/48 (37%), Positives = 25/48 (52%) Frame = +2 Query: 26 LVRIFYSIIQHKTNRNVTFAFSLYFFIK*KKDRYSPHSP*YILYF*IV 169 LV FY+ ++H R V F+ + FI DR P Y+L+F IV Sbjct: 8 LVHYFYNYLEHFVPRGVPFSKAKKLFI----DRLIFSPPFYLLFFYIV 51 >SB_39521| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 94 Score = 28.3 bits (60), Expect = 7.0 Identities = 13/36 (36%), Positives = 20/36 (55%) Frame = -1 Query: 583 HCIGIIVS*KLLRLSYLHVHFSFILATIVMMIVYFY 476 H I II++ LS+ H H I+ I+ I++FY Sbjct: 16 HIIAIIINKLSSSLSHYHHHHYIIIIIILTSIIHFY 51 >SB_28301| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 163 Score = 28.3 bits (60), Expect = 7.0 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 4/55 (7%) Frame = +2 Query: 377 RSITTSRFIKR---EPPSGPF-PNVEYITA*TT*LTSIKINYHHYNSRQDEREMH 529 R+ TT R + + P+ P P+ +TA TT LTS + HYNSR +H Sbjct: 55 RATTTQRIAGKHSEKTPAAPQQPHYNNLTA-TTLLTSAALQQPHYNSRTATTALH 108 >SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1671 Score = 27.9 bits (59), Expect = 9.3 Identities = 16/41 (39%), Positives = 20/41 (48%) Frame = +2 Query: 302 CFYLIHFTPKLKLNLGSP*KLDCKCRSITTSRFIKREPPSG 424 C + + F K KL P K++CK R T K PPSG Sbjct: 627 CPFNLKFDTK-KLECEWPNKVNCKSRPTTVPYVTKPTPPSG 666 >SB_51986| Best HMM Match : HLH (HMM E-Value=0.15) Length = 2110 Score = 27.9 bits (59), Expect = 9.3 Identities = 17/52 (32%), Positives = 29/52 (55%) Frame = +1 Query: 571 CQCNVNRLQLHRPFNVMCNEDDPHTPSLPLLTSIDKPETLTCSTNSLTILQK 726 CQ + RL+ + F V N + P+T S P S ++++ +TNS + LQ+ Sbjct: 265 CQ-TMFRLKKKKKFRVADNVEMPNTVSFPFTGSSGVSKSVSHATNSRSDLQR 315 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 21,482,958 Number of Sequences: 59808 Number of extensions: 423029 Number of successful extensions: 691 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 637 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 691 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 2034222073 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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