Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0496.Seq
         (751 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g23080.2 68414.m02886 auxin efflux carrier protein, putative ...    30   1.9  
At1g23080.1 68414.m02885 auxin efflux carrier protein, putative ...    30   1.9  
At5g57960.1 68418.m07252 GTP-binding family protein similar to S...    29   4.4  
At1g67220.1 68414.m07651 zinc finger protein-related similar to ...    29   4.4  
At1g06750.1 68414.m00717 hypothetical protein                          28   7.6  

>At1g23080.2 68414.m02886 auxin efflux carrier protein, putative
           similar to efflux carrier of polar auxin transport
           [Brassica juncea] gi|12331173|emb|CAC24691
          Length = 527

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +2

Query: 413 PPSGPFPNVEYITA*TT*LTSIKINYHHY--NSRQDEREMHM 532
           P S P PN E+ T   T   + K N+HH   ++  D +E+HM
Sbjct: 308 PGSYPAPNPEFSTGNKTGSKAPKENHHHVGKSNSNDAKELHM 349


>At1g23080.1 68414.m02885 auxin efflux carrier protein, putative
           similar to efflux carrier of polar auxin transport
           [Brassica juncea] gi|12331173|emb|CAC24691
          Length = 619

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +2

Query: 413 PPSGPFPNVEYITA*TT*LTSIKINYHHY--NSRQDEREMHM 532
           P S P PN E+ T   T   + K N+HH   ++  D +E+HM
Sbjct: 308 PGSYPAPNPEFSTGNKTGSKAPKENHHHVGKSNSNDAKELHM 349


>At5g57960.1 68418.m07252 GTP-binding family protein similar to
           SP|P25519 GTP-binding protein hflX {Escherichia coli}
          Length = 540

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = -3

Query: 254 SGL*AVIFSYTINCNLAFYNINLEEIVE 171
           S L A  +S+ ++CNLA + I LEE VE
Sbjct: 34  SRLHANCYSWRLSCNLAQHGIELEETVE 61


>At1g67220.1 68414.m07651 zinc finger protein-related similar to
           SP|Q09472 E1A-associated protein p300 {Homo sapiens},
           SP|Q92793 CREB-binding protein {Homo sapiens}; contains
           Pfam profiles PF00569: Zinc finger ZZ type, PF00628:
           PHD-finger, PF02135: TAZ zinc finger
          Length = 1357

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +2

Query: 332 LKLNLGSP*KLDCKCRSITTSRFIKREPPSGPFPNVE 442
           LKLNL SP  + C   SI++++FI  +    P P+ E
Sbjct: 62  LKLNLRSPWNVLCSPESISSAKFIVEKTCLIPVPSFE 98


>At1g06750.1 68414.m00717 hypothetical protein
          Length = 495

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -3

Query: 605 RCSCSLFTLHWHHRILKITAVI 540
           RC  S F  HW H  L IT V+
Sbjct: 97  RCILSYFAFHWSHADLMITQVL 118


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,736,411
Number of Sequences: 28952
Number of extensions: 290027
Number of successful extensions: 503
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)