Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0494.Seq
         (759 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyc...    31   0.24 
SPAC1851.02 |||1-acylglycerol-3-phosphate O-acyltransferase|Schi...    27   2.2  
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe...    27   2.9  
SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces p...    26   6.7  
SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom...    26   6.7  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    25   8.9  
SPAC27F1.08 |pdt1||Nramp family manganese ion transporter|Schizo...    25   8.9  

>SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -1

Query: 375 RSVHVDALTKMLFKIVFEH-PRDVYDERRLHRYLKDFEESDEFG 247
           R++  D+ T    ++ F+H P DV + RRL RY   F   D FG
Sbjct: 218 RALLCDSRTGRAHRLTFQHHPADVEEARRLRRYNMGFSR-DSFG 260


>SPAC1851.02 |||1-acylglycerol-3-phosphate
           O-acyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 279

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -1

Query: 504 FFLDTIMFLQ*HFIFICPFRDQYFVDR*VR-QFRYFKCHVIITIRSVH 364
           F   T++     F+ +C     + + + +R  FRYF CH  + I S +
Sbjct: 3   FIKSTLLATVTVFVGLCGINRFFTLPKCIRYHFRYFACHTFLAISSAY 50


>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 746

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
 Frame = -2

Query: 728 VLKVRIPH*MFDFFAQTTVL*ILFEPIHDDL*GIKFLNGIFYL--RRVVQEEVYCVFESD 555
           VL  R P  +   F + + L ++  P H D    +F +    L  R  +QEE   +  + 
Sbjct: 229 VLLARQPETIPVSFERMSSLLLMCLPSHPDFISPEFCHEWTELAERNGLQEEWLNILNT- 287

Query: 554 ACPFKRFTAFRYKECQSF 501
           AC FK   A  +KEC  F
Sbjct: 288 ACNFKECRAIIHKECSEF 305


>SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/44 (29%), Positives = 27/44 (61%)
 Frame = +1

Query: 355 SIDVYTSNRNYDVALKIAKLSDLSINKILIAEWTDKYEVLLQKH 486
           S+ V++S++ ++V   ++ + +    K LIA WT + ++ L KH
Sbjct: 72  SVMVFSSSKPHNVQAMLSAIMNEEQKKALIACWT-RVDMKLTKH 114


>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +1

Query: 430 NKILIAEWTDKYEVLLQKHDGIEEK 504
           N+IL+ E TD++E  ++KH  ++ K
Sbjct: 368 NRILMKESTDRFEKCMKKHAVVDIK 392


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 14/76 (18%), Positives = 34/76 (44%)
 Frame = +1

Query: 271  ILKISMETSFVINISRMFEDDFKQHLCESIDVYTSNRNYDVALKIAKLSDLSINKILIAE 450
            +L  S E+   +N+ R+     K+ +  +        NYD +L +       I   ++  
Sbjct: 817  LLSHSQESLLKLNMDRLISY-LKEDIFLAFKETQEGENYDTSLFVKTAFSFEIQPDVLDR 875

Query: 451  WTDKYEVLLQKHDGIE 498
            + ++Y++LL+    ++
Sbjct: 876  YGNEYDILLKSEHELD 891


>SPAC27F1.08 |pdt1||Nramp family manganese ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 521

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
 Frame = -2

Query: 437 ILLIDKSDSFAILSATS*LRFEVYTSMLSQRCCLKSSSNIL--EMFMTNDVSIDILRISK 264
           + ++  S+ FA+   +  +R    T M   R C +  +  +    ++  +++I    I++
Sbjct: 106 LFIVFLSNLFAVYLQSLCIRLGSVTGMDLARNCREHYNRYICWSFYVLAEIAIIATDIAE 165

Query: 263 RVMNSATALKSLFRIPL*PTISRTLFD 183
            V+ +A ALK L  IPL   +  T+ D
Sbjct: 166 -VIGTAVALKILMHIPLVAGVVITILD 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,786,726
Number of Sequences: 5004
Number of extensions: 52743
Number of successful extensions: 176
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)