Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0494.Seq
         (759 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0753 - 27797298-27797547,27797765-27797951,27798040-277981...    30   2.3  
02_04_0658 - 24793219-24794109                                         29   4.0  
08_01_0626 - 5445676-5446687,5447099-5447430                           29   5.3  
11_01_0268 - 2029007-2029464,2029521-2029615,2030815-2031077,203...    28   9.3  
03_01_0226 + 1795120-1795686,1796040-1796171                           28   9.3  

>04_04_0753 -
           27797298-27797547,27797765-27797951,27798040-27798113,
           27798719-27798949,27799047-27799133,27799244-27799434
          Length = 339

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
 Frame = +1

Query: 265 FEILKISMETSFVINISRMFEDDFKQ----HLCESIDVYTSNRNYDVAL 399
           +E+LK+++E S  I ++    D+FKQ    H    I +  S  N D+ +
Sbjct: 283 YEMLKVAVEPSGAIGLAAALSDEFKQSSAWHESSKIGIIVSGGNVDLGV 331


>02_04_0658 - 24793219-24794109
          Length = 296

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = -3

Query: 544 LNASLHSAIKSVNLFPRYHHVFAV---TLHIYLSIPRSIFC 431
           LNAS+ +++   +  P   HVFA+   +L I+L +P   FC
Sbjct: 181 LNASIVASVLVASRLPSRLHVFAIMLFSLQIFLFVPLVAFC 221


>08_01_0626 - 5445676-5446687,5447099-5447430
          Length = 447

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 633 LKIIMNWFEENLEYGRLREEIEHSM 707
           LKI M WF+E+     +  E+EH M
Sbjct: 169 LKIHMRWFDEDAMESEMEHEMEHEM 193


>11_01_0268 -
           2029007-2029464,2029521-2029615,2030815-2031077,
           2031154-2031279,2031404-2032996
          Length = 844

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = +2

Query: 62  QRKYSVESNRLSWQMSKEFLQRVAVSLIKIAISENFDSAYHQREFLRLLAK 214
           ++KYS+  ++ +W+   + +QRVAV   +  I   F  + +    LR L +
Sbjct: 669 KKKYSIRDSQENWRQKIQIIQRVAVK--QALIPREFIQSINSPRGLRFLLR 717


>03_01_0226 + 1795120-1795686,1796040-1796171
          Length = 232

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 19/44 (43%), Positives = 23/44 (52%)
 Frame = -1

Query: 387 IITIRSVHVDALTKMLFKIVFEHPRDVYDERRLHRYLKDFEESD 256
           II  RSV  DA+ KM        P D + ERRL    K FEE++
Sbjct: 153 IIEARSVE-DAIVKMSIAAEPALPPDRHPERRLKVSYKAFEEAE 195


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,672,210
Number of Sequences: 37544
Number of extensions: 298114
Number of successful extensions: 801
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)