Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0494.Seq
         (759 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10695| Best HMM Match : Pollen_Ole_e_I (HMM E-Value=5.2)            31   0.77 
SB_3382| Best HMM Match : WD40 (HMM E-Value=2.8e-05)                   29   3.1  
SB_53774| Best HMM Match : efhand (HMM E-Value=0.012)                  29   5.4  
SB_57864| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_16484| Best HMM Match : MSG (HMM E-Value=0.24)                      28   7.2  

>SB_10695| Best HMM Match : Pollen_Ole_e_I (HMM E-Value=5.2)
          Length = 300

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +2

Query: 8   HHFDLESSKLLTSFILHCQRKYSVESNR-LSWQMSK 112
           H FD    K+L + IL+C++K ++E  R L+W  ++
Sbjct: 41  HFFDEYYKKILKNVILNCEKKKNIEKKRALAWDRTR 76


>SB_3382| Best HMM Match : WD40 (HMM E-Value=2.8e-05)
          Length = 375

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 551 RRHFQRRSRLPPGLLGEDKRSRSEILFP 634
           RRHF+ R RL P   G D ++  E++ P
Sbjct: 338 RRHFEGRERLAPVTGGRDAKTSDEVINP 365


>SB_53774| Best HMM Match : efhand (HMM E-Value=0.012)
          Length = 918

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 23/107 (21%), Positives = 47/107 (43%), Gaps = 1/107 (0%)
 Frame = +1

Query: 190 RVLEIVG*SGIRKRLFSAVAEFITLFEILKISMETSFVINISRMFEDDFKQHLCESIDVY 369
           ++++++      +R   A+  F+TL  +LK   +T FV+        + + +  + +   
Sbjct: 576 QIIDLLKNCSTHQRGTIAIRAFMTLAGLLKHPQDTDFVVKFMHKANSNLRYNSLDWLIAN 635

Query: 370 TSNRNYDVALKIAKLSDLSINKILIAEWTDKYE-VLLQKHDGIEEKD 507
             ++N  + L    L D  I   +  E  DK   V L+K D ++  D
Sbjct: 636 VRDKNEIIGL----LQDKHIPDDVRQEAIDKVNTVFLEKEDELQSND 678


>SB_57864| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 122

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +2

Query: 8   HHFDLESSKLLTSFILHCQRKYSVESNRLSWQMSK 112
           H FD    K+L + IL+C++K   +   L+W  ++
Sbjct: 41  HFFDEYYKKILKNVILNCEKKKHRKKRPLAWDRTR 75


>SB_16484| Best HMM Match : MSG (HMM E-Value=0.24)
          Length = 661

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -3

Query: 493 YHHVFAVTLHIYLSIPRSIFC*SISPTVSLF*VPRHNYDS 374
           YH +     H Y S  R+I C     TVS   +P HN+ S
Sbjct: 105 YHKMDVKPCHNYSSSERAIHCYKGEETVSSQDIPSHNHPS 144


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,937,926
Number of Sequences: 59808
Number of extensions: 374998
Number of successful extensions: 953
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)