Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0494.Seq
         (759 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ131742-1|CAA10498.1|  590|Caenorhabditis elegans protein ( Cae...    31   0.67 
AF098989-4|AAK18956.2|  590|Caenorhabditis elegans Dystrobrevin ...    31   0.67 
Z71264-5|CAA95829.1|  241|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z70718-11|CAA94680.1|  590|Caenorhabditis elegans Hypothetical p...    29   3.6  
Z68301-10|CAA92629.1|  590|Caenorhabditis elegans Hypothetical p...    29   3.6  
U97005-6|AAB52279.1|  242|Caenorhabditis elegans Hypothetical pr...    29   3.6  
AF003388-1|AAW88390.1| 2779|Caenorhabditis elegans Hypothetical ...    29   4.7  
Z78539-4|CAB01731.1|  591|Caenorhabditis elegans Hypothetical pr...    28   8.3  
L14324-4|AAA28184.1|  159|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>AJ131742-1|CAA10498.1|  590|Caenorhabditis elegans protein (
           Caenorhabditis elegansmRNA for dystrobrevin. ).
          Length = 590

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = -2

Query: 578 VYCVFESDACPFKRFTAFRYK--ECQSFSSIPSCF 480
           VY     DAC  + FT FRYK   C ++    SCF
Sbjct: 258 VYHPVVCDACQVRSFTGFRYKCQRCANYQLCQSCF 292


>AF098989-4|AAK18956.2|  590|Caenorhabditis elegans Dystrobrevin
           homolog protein 1 protein.
          Length = 590

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = -2

Query: 578 VYCVFESDACPFKRFTAFRYK--ECQSFSSIPSCF 480
           VY     DAC  + FT FRYK   C ++    SCF
Sbjct: 258 VYHPVVCDACQVRSFTGFRYKCQRCANYQLCQSCF 292


>Z71264-5|CAA95829.1|  241|Caenorhabditis elegans Hypothetical
           protein K07G5.2 protein.
          Length = 241

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = -1

Query: 405 YFKCHVIITIRSVHVDALTKMLFKIVFEHPRDVYDERRLHRYLKDFEESDEFGDGTKKSF 226
           Y KC +   +  VH       L K + E  ++V  E+R  + LKD  +      G K  F
Sbjct: 147 YLKCQIETRVLEVHGSWEDLELKKELREQSKEVRSEKRFEKKLKDLRQQIRGTSGVKVDF 206


>Z70718-11|CAA94680.1|  590|Caenorhabditis elegans Hypothetical
           protein W01B6.9 protein.
          Length = 590

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -1

Query: 324 EHPRDVYDERRLHRYLKDFEESDEFGDGTK 235
           E+P   Y +   HR  K FE+S+EF D TK
Sbjct: 220 ENPSSSYWDDTKHRLRKYFEQSNEFEDMTK 249


>Z68301-10|CAA92629.1|  590|Caenorhabditis elegans Hypothetical
           protein W01B6.9 protein.
          Length = 590

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -1

Query: 324 EHPRDVYDERRLHRYLKDFEESDEFGDGTK 235
           E+P   Y +   HR  K FE+S+EF D TK
Sbjct: 220 ENPSSSYWDDTKHRLRKYFEQSNEFEDMTK 249


>U97005-6|AAB52279.1|  242|Caenorhabditis elegans Hypothetical
           protein F19F10.1 protein.
          Length = 242

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 20/57 (35%), Positives = 28/57 (49%)
 Frame = -2

Query: 581 EVYCVFESDACPFKRFTAFRYKECQSFSSIPSCFCSNTSYLSVHSAINILLIDKSDS 411
           +V  +F      FKR T +RY   Q  S + S   S T  L + S +  LL D+S+S
Sbjct: 4   DVSPIFSPKHLQFKRPTLWRYGRIQKISIMSSKRSSPTGKLRLLSFLRDLLEDESNS 60


>AF003388-1|AAW88390.1| 2779|Caenorhabditis elegans Hypothetical
           protein R10F2.1 protein.
          Length = 2779

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +1

Query: 415 SDLSINKILIAEWTDKYEVLLQKHDG 492
           +DL +N  L  E+ DKYE+L++  DG
Sbjct: 183 ADLVVNGQLDREFRDKYELLIEAQDG 208


>Z78539-4|CAB01731.1|  591|Caenorhabditis elegans Hypothetical
           protein C31E10.6 protein.
          Length = 591

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +1

Query: 253 FITLFEILKISMETSFVINISRMFEDDFKQHLCESIDV 366
           F+T FE+ +I+   +  I+ + MF  DF Q L  +++V
Sbjct: 328 FLTSFEVERITDVVATTISRASMFHTDFSQELELAVEV 365


>L14324-4|AAA28184.1|  159|Caenorhabditis elegans Hypothetical
           protein ZK112.5 protein.
          Length = 159

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
 Frame = +3

Query: 489 WYRGKRLTLFIAECS--EAFKRAGVTFKDAVDFLL--DYSAKIKDP 614
           WY GK LTLF    +  ++ + A +  K  VD +L  DY+  I +P
Sbjct: 84  WYMGKTLTLFEGPLNYPDSSRLAQIISKHNVDIVLGSDYNYSIPNP 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,300,935
Number of Sequences: 27780
Number of extensions: 293072
Number of successful extensions: 881
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)