Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0494.Seq
         (759 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   4.1  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   9.5  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   9.5  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   9.5  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = +3

Query: 537 AFKRAGVTFKDAVDFLLDYSAKIKDPVQKFYSLKIIMNWFEENL 668
           +F+    T++    FLL  S  I   V   Y++ + ++W ++ L
Sbjct: 217 SFQGPPFTYRYGFSFLLYVSGFITTEVAGTYAIFLYISWHQKEL 260


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 236 KSLFRIPL*PTISRTLFD 183
           K  F +PL P +S  +FD
Sbjct: 199 KRKFNVPLQPVVSDPIFD 216


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 236 KSLFRIPL*PTISRTLFD 183
           K  F +PL P +S  +FD
Sbjct: 199 KRKFNVPLQPVVSDPIFD 216


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = -2

Query: 500 SSIPSCFCSNTSYLSVHSAINIL 432
           S++PS FC + + L+V +++ I+
Sbjct: 699 SAVPSKFCLSVTLLTVATSLVIV 721


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,862
Number of Sequences: 438
Number of extensions: 3391
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)