Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0494.Seq
         (759 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g47180.1 68415.m05892 galactinol synthase, putative similar t...    30   1.9  
At1g26230.1 68414.m03200 chaperonin, putative similar to SWISS-P...    29   3.4  
At5g21100.1 68418.m02513 L-ascorbate oxidase, putative similar t...    29   4.4  
At4g11640.1 68417.m01861 serine racemase, putative similar to se...    28   5.9  
At3g23870.1 68416.m03000 permease-related low similarity to puri...    28   7.7  

>At2g47180.1 68415.m05892 galactinol synthase, putative similar to
           galactinol synthase, isoform GolS-1 GI:5608497 from
           [Ajuga reptans]
          Length = 344

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 576 DFLLDYSAKIKDPVQKFYSLKIIMNW-FEENLEYGRLR 686
           DFL  Y  KI  P+   Y+L + M W   EN+E G+++
Sbjct: 225 DFLNMYFKKIYKPIPLVYNLVLAMLWRHPENVELGKVK 262


>At1g26230.1 68414.m03200 chaperonin, putative similar to
           SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
           subunit, chloroplast precursor (60 kDa chaperonin beta
           subunit, CPN-60 beta) [Pisum sativum]; contains
           Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
          Length = 611

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = -2

Query: 347 RCCLKSSSNILEMFMTND-VSIDILRISKR 261
           RCCL+ +S++ + F+T+D V ++I  I  R
Sbjct: 542 RCCLEHASSVAQTFLTSDCVVVEIKEIKPR 571


>At5g21100.1 68418.m02513 L-ascorbate oxidase, putative similar to
           L-ascorbate oxidase [Precursor] SP:Q40588 from
           [Nicotiana tabacum]
          Length = 573

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 679 VCAKKSNIQCGMRTFKTEPNSIF 747
           VC  K N QC  +T + EPN ++
Sbjct: 211 VCTFKENDQCAPQTLRVEPNRVY 233


>At4g11640.1 68417.m01861 serine racemase, putative similar to
           serine racemase [Mus musculus] GI:6448865; contains Pfam
           profile PF00291: Pyridoxal-phosphate dependent enzyme
          Length = 346

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
 Frame = +1

Query: 265 FEILKISMETSFVINISRMFEDDFKQHL----CESIDVYTSNRNYDV 393
           +EILK+S+E S  I ++ +  + F+ +     C++I +  S  N D+
Sbjct: 289 YEILKVSVEPSGAIGLAAVLSNSFRNNPSCRDCKNIGIVLSGGNVDL 335


>At3g23870.1 68416.m03000 permease-related low similarity to purine
           permease [Arabidopsis thaliana] GI:7620007; contains 9
           predicted transmembrane domains; contains Pfam PF05653:
           Protein of unknown function (DUF803); identified as
           COG0697, Permeases of the drug/metabolite transporter
           (DMT) superfamily
          Length = 335

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +2

Query: 41  TSFILHCQRKYSVESNRLSWQMSKE--FLQRVAVSLIKIAI 157
           T+ +LH   +  +ES +  WQ++ E  FL   AV +I +AI
Sbjct: 121 TTIVLHAPHEQKIESVKQIWQLAIEPGFLVYSAVIVIVVAI 161


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,061,111
Number of Sequences: 28952
Number of extensions: 259574
Number of successful extensions: 776
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)