Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0493.Seq
         (618 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    23   2.1  
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       22   3.6  
EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    21   8.3  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    21   8.3  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   8.3  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   8.3  

>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
 Frame = -1

Query: 378 VRRTDTLHQLLNV---MYHILYGLP 313
           VRRT+TL Q+LN     Y+  +G P
Sbjct: 197 VRRTETLAQILNQTVNFYNSAFGWP 221


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 400 PLPAKFEPPIEKKDTPKMET 459
           PLP  F PP +K   P  +T
Sbjct: 30  PLPRHFNPPSDKLHHPIHQT 49


>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +3

Query: 384 GGSQCTAAGQV*TSYREKRHSKDGD 458
           GG  C A G+V  S    RH+   D
Sbjct: 153 GGFTCPAPGEVSNSGSFSRHAHPDD 177


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +3

Query: 384 GGSQCTAAGQV*TSYREKRHSKDGD 458
           GG  C A G+V  S    RH+   D
Sbjct: 153 GGFTCPAPGEVSNSGSFSRHAHPDD 177


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +1

Query: 379  PTEVASAPLPAKFEPPIEKKDTP 447
            PT+  + P PA   P ++K   P
Sbjct: 1080 PTQGTTIPPPAVVMPEVDKPSQP 1102


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 394 SAPLPAKFEPPIEKKD 441
           +APL AK EP ++  D
Sbjct: 325 TAPLKAKIEPQVQTID 340


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,897
Number of Sequences: 336
Number of extensions: 3588
Number of successful extensions: 18
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15770591
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)