Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0493.Seq
(618 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 29 0.41
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc... 29 0.54
SPCC594.02c |||conserved fungal protein|Schizosaccharomyces pomb... 27 1.6
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 27 2.2
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 27 2.9
SPBC3E7.13c |||splicing factor, SYF2 family|Schizosaccharomyces ... 27 2.9
SPBC215.11c |||aldo/keto reductase, unknown biological role|Schi... 26 3.8
SPBC15D4.04 |gpt2|gpt, alg7|UDP-N-acetylglucosamine--dolichyl-ph... 25 6.6
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 25 6.6
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 6.6
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 25 8.8
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 25 8.8
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 29.5 bits (63), Expect = 0.41
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +3
Query: 216 PRCNPNRKALKRKQKQTF-ASGADSDKHS-QRSREEGHTECDT*HSAAGEGCQC 371
PR NPNR ++ + F S SD +S Q+SRE ++ C HS A C
Sbjct: 88 PRVNPNRLMTSKRPNELFKTSSMSSDCYSPQKSRESLNSLC---HSPAPSVSSC 138
>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 29.1 bits (62), Expect = 0.54
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +1
Query: 277 ELIAINTPNAQGRKAIQNVIHNIQQLVKGVSASDPTEVASAP 402
+LIA N P+ + + ++ + Q VKGV+A D T+ +AP
Sbjct: 265 DLIARNHPDVKSQASVSSTASTTGQTVKGVNA-DQTQQPTAP 305
>SPCC594.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 489
Score = 27.5 bits (58), Expect = 1.6
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +1
Query: 304 AQGRKAIQNVIHNIQQLVKGVSASDPTEV-ASAPLPAKFEPPI-EKKDTPKMETPKKPGP 477
A+ +K++ QQ +G S+S P+E A+ K EP + E D TP P P
Sbjct: 253 AKNQKSLPKTSDLEQQ--RGTSSSQPSENDANITALPKPEPKMYENSDLTPARTPVTPAP 310
Query: 478 ASKP 489
KP
Sbjct: 311 LEKP 314
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 27.1 bits (57), Expect = 2.2
Identities = 16/56 (28%), Positives = 23/56 (41%)
Frame = +1
Query: 358 KGVSASDPTEVASAPLPAKFEPPIEKKDTPKMETPKKPGPASKPWRPTLMPLLRRT 525
K S +D + S+ P E +EKK + K T KP +P+ RT
Sbjct: 68 KITSEADTEKYNSSKSPVNKEGSVEKKSSEKSSTNNKPWRGDNTSKPSANSSAERT 123
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 26.6 bits (56), Expect = 2.9
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +1
Query: 358 KGVSASDPTEVASAPLPAKFEPPIEKKDTPKMETPKKPGPASKPWRPTLMP 510
K SA+D +S P+ + + K K+ P P S+P +P++ P
Sbjct: 267 KSTSAADQAVASSKPIKKAWASVAKSKK--KVTPAPAPAPESEPSKPSIAP 315
>SPBC3E7.13c |||splicing factor, SYF2 family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 229
Score = 26.6 bits (56), Expect = 2.9
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 249 RKQKQTFASGADSDKHSQRSRE 314
RK+KQT + A SD HSQ S++
Sbjct: 94 RKKKQTIQNVAFSDYHSQASKD 115
>SPBC215.11c |||aldo/keto reductase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 26.2 bits (55), Expect = 3.8
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -1
Query: 576 LAPIDRHLPSVRGLSAPSSPE*WHECGSPRF 484
L P + + +G + P WH CG+P+F
Sbjct: 84 LYPYKGLIIATKGGLVRTGPNEWHPCGAPKF 114
>SPBC15D4.04 |gpt2|gpt,
alg7|UDP-N-acetylglucosamine--dolichyl-phosphateN-
acetylglucosaminephosphotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 446
Score = 25.4 bits (53), Expect = 6.6
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 12/77 (15%)
Frame = -1
Query: 348 LNVMYHILYGLPPLSVGSVYRYQLRRQ----RFAFVF---SLELFC---LGCIGG--GMV 205
L V+Y++ YG+ +SV S+ R L+R F + F ++ +FC + I G G+
Sbjct: 165 LLVVYYVDYGVTYVSVPSIVRPFLKRSLINLGFLYYFYMAAVAIFCPNSINIIAGVNGVE 224
Query: 204 IFGSLSASV*LDCNKLF 154
SL ++ + CN LF
Sbjct: 225 AGQSLVLALVIACNDLF 241
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 25.4 bits (53), Expect = 6.6
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = -1
Query: 474 PWFLRCL---HLWSVFFLYRRFKLGRQRCTGYLRGVRRT 367
P F+RC+ + R LG+ RC G L G+R T
Sbjct: 646 PHFIRCIVPNEEKKMHTFNRPLVLGQLRCNGVLEGIRIT 684
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.4 bits (53), Expect = 6.6
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = +1
Query: 379 PTEVASAPLPAKFEPPIEKKDTPKMETPKKPGPASKP 489
P+ + P P+ PP+ K P + P P P+ P
Sbjct: 1088 PSGIPPVPKPSVAAPPVPK---PSVAVPPVPAPSGAP 1121
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 25.0 bits (52), Expect = 8.8
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +1
Query: 385 EVASAPLPAKFEPPIEKKDTPKMETPKKPGPASKP 489
EVA P E P TPK+ET PA+ P
Sbjct: 96 EVADEPA----EAPASTSSTPKVETAAAAAPAATP 126
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.0 bits (52), Expect = 8.8
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +1
Query: 433 KKDTPKMETPKKPGPASKPWRPTLMP 510
K D K P+KP PA KP T P
Sbjct: 901 KSDAAKSIKPQKPEPALKPVEGTADP 926
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,638,289
Number of Sequences: 5004
Number of extensions: 56256
Number of successful extensions: 185
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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