Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0493.Seq
         (618 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.4  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   4.2  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   7.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.3  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    21   9.6  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    21   9.6  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   9.6  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +1

Query: 67   PTTTWPATHLRAESSGQSARVPENPLFERE 156
            P  TW       +SS +  ++PE  LF +E
Sbjct: 1306 PEVTWKVRGAVLQSSDRLRQLPEGSLFIKE 1335


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -1

Query: 291 YRYQLRRQRFAFVFSLELFCLGCIGGGMVIF 199
           Y  +LRR+   +VF+L L C+      +++F
Sbjct: 205 YEIRLRRRPMFYVFNLILPCILINSVALLVF 235


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 56  PPSGLRPRGQRPTCAQSPPVSLLEYRKIPSL 148
           PP   +  G + T  + PP+     RK+PS+
Sbjct: 621 PPVTTKRDGTQETEERLPPLPPKRIRKMPSM 651


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 86  RPTCAQSPPVSLLEYRKIP 142
           +P  +Q   +SLLE +KIP
Sbjct: 518 KPKNSQDNNISLLEQQKIP 536


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 261 AFVFSLELFCLGCI 220
           AF++SL L CL  I
Sbjct: 8   AFIYSLALLCLHAI 21


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 261 AFVFSLELFCLGCI 220
           AF++SL L CL  I
Sbjct: 8   AFIYSLALLCLHAI 21


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 49  CKAAFGPTTTWPATHLRAESSG 114
           C  +   TT WPAT +   ++G
Sbjct: 771 CATSNYSTTRWPATSVITTTTG 792


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,308
Number of Sequences: 438
Number of extensions: 4201
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)