Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0491.Seq
         (781 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    25   0.68 
AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    23   2.1  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    23   2.1  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    23   2.1  

>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 251 YRPGCAAIESVSSFLDG 201
           Y PGCA ++S S+ L G
Sbjct: 382 YLPGCAMVDSCSNILTG 398


>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 625 LLSKIYQNIWIMMLSSYSKEVR 690
           LLS I    WI+ +  Y KE+R
Sbjct: 50  LLSTILGTCWIIYVRIYCKEIR 71


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
 Frame = -3

Query: 587 DNRVPGSDGSGHRQK--QELQGIVPGAYSRTTPYGSLYITTSSRMFTKP 447
           D+ +P      H Q+  Q      P AYS ++P GS    +SS   T P
Sbjct: 8   DSMLPKYHQQFHHQQLFQSATTEAPAAYSSSSPSGSSPQHSSSSASTSP 56


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
 Frame = -3

Query: 587 DNRVPGSDGSGHRQK--QELQGIVPGAYSRTTPYGSLYITTSSRMFTKP 447
           D+ +P      H Q+  Q      P AYS ++P GS    +SS   T P
Sbjct: 8   DSMLPKYHQQFHHQQLFQSATTEAPAAYSSSSPSGSSPQHSSSSASTSP 56


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,866
Number of Sequences: 336
Number of extensions: 3954
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21065107
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)