Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0491.Seq
(781 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo... 47 3e-06
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb... 42 1e-04
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|... 42 1e-04
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe... 38 0.002
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc... 35 0.015
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha... 28 1.3
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 27 4.0
SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces ... 26 5.3
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 26 7.0
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 26 7.0
>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 500
Score = 46.8 bits (106), Expect = 3e-06
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Frame = +3
Query: 510 IGAWNYPLQLLLLPMAGAIAAGNTVIVKPSELSV-ACSNFVVENLPKYLDNDAFIVFEGG 686
I WN+PL++ L + AIA+GN V++KPSEL+ +C F + L + V G
Sbjct: 169 ITPWNFPLKMALWKLVPAIASGNCVVLKPSELAPWSCLEFALICKEAGLPDGVLNVIIGS 228
Query: 687 PQETTELLK--QRFDYIFYTGGTNVGR 761
+E+ L + Y+ +TG G+
Sbjct: 229 GKESGAALSCHPKIAYLAFTGSLATGK 255
>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 41.9 bits (94), Expect = 1e-04
Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Frame = +3
Query: 462 SRRGGYIQ*-PVRRGPRIGAWNYPLQLLLLPMAGAIAAGNTVIVKPSELS 608
S +GGY++ P+ + +WNYPL L P+ A+ AGN ++VK SEL+
Sbjct: 117 SYKGGYVKYEPLGVIAALVSWNYPLHNALGPIISALFAGNAIVVKGSELT 166
>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 503
Score = 41.9 bits (94), Expect = 1e-04
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Frame = +3
Query: 519 WNYPLQLLLLPMAGAIAAGNTVIVKPSELSVACSNFVVENLPKY-LDNDAFIVFEGGPQE 695
WN+P + +A A+A GNT+I+K +EL+ + + + +P+ V G +
Sbjct: 170 WNFPFLMCAWKIAPAVACGNTIILKTAELTPLSALCLTKFVPECGFPPGVINVLSGDGRR 229
Query: 696 TTELLKQRFDY--IFYTGGTNVGRM 764
+ D + +TG T VGRM
Sbjct: 230 CGNAISSHMDIDKVAFTGSTGVGRM 254
>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 37.9 bits (84), Expect = 0.002
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Frame = +3
Query: 507 RIGAWNYPLQLLLLPMAGAIAAGNTVIVKPSE---LSVACSNFVVE--NLPKYLDNDAFI 671
+I WNYPL + +A A+AAGN +I+K +E LS+ +VE PK + N I
Sbjct: 160 QIVPWNYPLNMAGWKIAPALAAGNCIIIKSAETTPLSLLYFATLVEEAGFPKGVVN---I 216
Query: 672 VFEGGPQETTELLKQ-RFDYIFYTGGTNVG 758
+ G + + K D I +TG T VG
Sbjct: 217 ISGLGTVAGSYMAKHPGIDKIAFTGSTKVG 246
>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 34.7 bits (76), Expect = 0.015
Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 7/95 (7%)
Frame = +3
Query: 510 IGAWNYPLQLLLLPMAGAIAAGNTVIVKPSE----LSVACSNFVVE-NLPKYLDN--DAF 668
I WN+P ++ + A+AAG TV+++P+ ++A + +P + N A
Sbjct: 166 ITPWNFPAAMITRKVGAALAAGCTVVIRPAAETPFTALALAKLAERAGVPAGVLNMVTAN 225
Query: 669 IVFEGGPQETTELLKQRFDYIFYTGGTNVGRMFTK 773
E G + TT L ++ + +TG TNVG++ K
Sbjct: 226 SPSEHGIELTTNPLIRK---VSFTGSTNVGKILAK 257
>SPAC139.05 |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 493
Score = 28.3 bits (60), Expect = 1.3
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 7/102 (6%)
Frame = +3
Query: 480 IQ*PVRRGPRIGAWNYPLQLLLLPMAGAIAAGNTVIVKPS-ELSVACSNFV-VENLPKYL 653
I+ PV I WN+P ++ A+AAG T I P+ C V + +
Sbjct: 151 IKQPVGVSALITPWNFPAAMIARKGGAALAAGCTAIFLPAFRTPYVCLGLVRLAQEAGFP 210
Query: 654 DNDAFIVFEG-----GPQETTELLKQRFDYIFYTGGTNVGRM 764
D ++ G + TT + ++ + +TG TNVG++
Sbjct: 211 DGVLNVITSSDASAHGKELTTNPIVRK---VSFTGSTNVGKI 249
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 26.6 bits (56), Expect = 4.0
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -3
Query: 599 AGFHDNRVPGSDGSGHRQKQELQGIVPG 516
+G H V G G+ H + EL G PG
Sbjct: 323 SGTHGTHVAGIIGANHPETPELNGAAPG 350
>SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 170
Score = 26.2 bits (55), Expect = 5.3
Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 2/69 (2%)
Frame = -2
Query: 372 TSSRMASILLR--LRSLCRASTMTFWFSSYILNKFLSC*RRLLSAWLCRD*KCLELFGRP 199
+ S+M S++ + LR LC+ + Y L K C W +CL L P
Sbjct: 45 SGSKMGSVVCKHWLRGLCKKGEQCDFLHEYNLKKMPPCHFYAERGWCSNGEECLYLHLDP 104
Query: 198 HQLTSSFVW 172
+ W
Sbjct: 105 SKQVGVCAW 113
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.8 bits (54), Expect = 7.0
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -3
Query: 518 GAYSRTTPYGSLYITTSSRMFTKPFGGCSGXSTRPNNAECSSNH*SSS 375
G T S+ TTSS + P + +T P+++ SS+ SSS
Sbjct: 121 GVLQTTVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSS 168
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 25.8 bits (54), Expect = 7.0
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -3
Query: 596 GFHDNRVPGSDGSGHRQKQEL-QGIVPGAYSRTTPYGSLYITTSSRMFT 453
GFH RVP SD +G +Q+Q+ +G++ + + P T F+
Sbjct: 564 GFHVVRVP-SDAAGFQQRQQQEEGVLEAHTNESAPIAPFPYCTDDFSFS 611
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,128,002
Number of Sequences: 5004
Number of extensions: 66068
Number of successful extensions: 207
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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