Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0491.Seq
(781 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42352| Best HMM Match : No HMM Matches (HMM E-Value=.) 106 2e-23
SB_37963| Best HMM Match : Aldedh (HMM E-Value=1.8e-16) 48 1e-05
SB_12802| Best HMM Match : Aldedh (HMM E-Value=0) 47 1e-05
SB_32909| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_57708| Best HMM Match : Aldedh (HMM E-Value=0) 40 0.002
SB_25829| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_5072| Best HMM Match : Aldedh (HMM E-Value=2.4e-14) 33 0.20
SB_58786| Best HMM Match : Aldedh (HMM E-Value=0) 33 0.26
SB_10421| Best HMM Match : Guanylate_cyc (HMM E-Value=0) 33 0.26
SB_28059| Best HMM Match : DUF149 (HMM E-Value=0.71) 32 0.45
SB_38133| Best HMM Match : TolA (HMM E-Value=0.38) 30 1.8
SB_26122| Best HMM Match : Aldedh (HMM E-Value=0) 30 2.4
SB_29610| Best HMM Match : Extensin_2 (HMM E-Value=2.3) 29 4.2
SB_31305| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
>SB_42352| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 106 bits (254), Expect = 2e-23
Identities = 46/85 (54%), Positives = 62/85 (72%)
Frame = +3
Query: 510 IGAWNYPLQLLLLPMAGAIAAGNTVIVKPSELSVACSNFVVENLPKYLDNDAFIVFEGGP 689
I AWNYP+QL+ LP+ GAIA GN ++KPSE++ A + V + +PKYLD D + V GG
Sbjct: 79 ISAWNYPVQLIFLPLVGAIAGGNCAVLKPSEVASATAQLVADLVPKYLDPDCYPVVNGGV 138
Query: 690 QETTELLKQRFDYIFYTGGTNVGRM 764
ET +LL Q+FD IFYTGG+ VG++
Sbjct: 139 PETQQLLNQKFDKIFYTGGSAVGKL 163
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +2
Query: 287 MYEENQNVMVEALHKDLRRSKMEAILLEVDYLINDLRNTLHYLDEW 424
+ +++++ +V AL KDL + + E ++ E+ ND L L EW
Sbjct: 4 LLDKHEDEIVAALKKDLCKPRQETVIAEILLAKNDAILALEKLSEW 49
>SB_37963| Best HMM Match : Aldedh (HMM E-Value=1.8e-16)
Length = 266
Score = 47.6 bits (108), Expect = 1e-05
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Frame = +3
Query: 510 IGAWNYPLQLLLLPMAGAIAAGNTVIVKPSELSVACSNFVVE--NLPKYLDNDAFIVFEG 683
I WN PL LL +A A+A+G TV+ KPSE++ + + E N + IVF
Sbjct: 153 ISPWNLPLYLLSFKIAPAVASGCTVVCKPSEMTSVTAWMMAELINDAGFPPGVINIVFGT 212
Query: 684 GPQETTELLKQ-RFDYIFYTGGTNVGRMFTK 773
G + + +++ I +TG T +G + TK
Sbjct: 213 GSRTGSAIVQHPDVHLISFTGSTTIGELITK 243
>SB_12802| Best HMM Match : Aldedh (HMM E-Value=0)
Length = 880
Score = 47.2 bits (107), Expect = 1e-05
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 7/91 (7%)
Frame = +3
Query: 510 IGAWNYPLQLLLLPMAGAIAAGNTVIVKPSEL----SVACSNFVVE-NLPKYLDNDAFIV 674
IGAWNYP+Q +A AIA GNT++ KPS L +VA ++ + E +P + N +
Sbjct: 417 IGAWNYPIQTACWKIAPAIACGNTIVYKPSPLTPMNAVALADILTEAGVPPGVVN----I 472
Query: 675 FEGGPQETTELLKQ--RFDYIFYTGGTNVGR 761
+GG ET E+L + + +TG G+
Sbjct: 473 IQGG-GETGEMLSKDPNVAKVSFTGSVPTGQ 502
>SB_32909| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1411
Score = 40.7 bits (91), Expect = 0.001
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Frame = +3
Query: 519 WNYPLQLLLLPMAGAIAAGNTVIVKPSELSVACSNFVVENLPKY-LDNDAFIVFEGGPQE 695
WN+PL LL + A+A GNTV++KP+ + + E + L F V G
Sbjct: 777 WNFPLMLLCWKVCPALAMGNTVVLKPATYTRLSALLFAEICAEAGLPPGVFNVVTGNGAF 836
Query: 696 TTELL-KQRFDYIFYTGGTNVGRM 764
++L D + +TG T VG++
Sbjct: 837 GSQLAGHPDVDKVAFTGSTEVGKL 860
>SB_57708| Best HMM Match : Aldedh (HMM E-Value=0)
Length = 528
Score = 40.3 bits (90), Expect = 0.002
Identities = 17/34 (50%), Positives = 24/34 (70%)
Frame = +3
Query: 519 WNYPLQLLLLPMAGAIAAGNTVIVKPSELSVACS 620
WN+PL ++ A A+AAG TVI+KPSE + C+
Sbjct: 149 WNFPLGMITRKAAAALAAGCTVIIKPSEETPFCA 182
>SB_25829| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 826
Score = 40.3 bits (90), Expect = 0.002
Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Frame = +3
Query: 489 PVRRGPRIGAWNYPLQLLLLPMAGAIAAGNTVIVKPSELSVACSNFVVENLPKYLDNDAF 668
PV I WN+PL + + +A A+A GN VI+KP+E + + + L K A
Sbjct: 467 PVGLVGAITPWNFPLNMASVKIAPALACGNVVILKPAEQTPLTALYFCA-LVKEAGFPAG 525
Query: 669 I--VFEG-GPQETTELLKQ-RFDYIFYTGGTNVGRM 764
+ V G GP + D + +TG T VGR+
Sbjct: 526 VVNVIPGYGPTAGAAITTHLDIDKVSFTGSTEVGRL 561
>SB_5072| Best HMM Match : Aldedh (HMM E-Value=2.4e-14)
Length = 266
Score = 33.5 bits (73), Expect = 0.20
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +3
Query: 510 IGAWNYPLQLLLLPMAGAIAAGNTVIVKPSE 602
I AWN+PL L + A+A G T ++KP+E
Sbjct: 194 IVAWNFPLLLACWKLGPALATGCTTVLKPAE 224
>SB_58786| Best HMM Match : Aldedh (HMM E-Value=0)
Length = 421
Score = 33.1 bits (72), Expect = 0.26
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +3
Query: 489 PVRRGPRIGAWNYPLQLLLLPMAGAIAAGNTVIVKPS 599
PV I WN+P+ +L+ + AIA G T+I +PS
Sbjct: 81 PVGVCASITPWNFPIAMLVRKASSAIACGCTMIARPS 117
>SB_10421| Best HMM Match : Guanylate_cyc (HMM E-Value=0)
Length = 1485
Score = 33.1 bits (72), Expect = 0.26
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +3
Query: 510 IGAWNYPLQLLLLPMAGAIAAGNTVIVKPSE 602
I WN+PL + L +A A+A G VI+KP+E
Sbjct: 1344 ITPWNFPLLMEGLKLAPALACGCVVILKPAE 1374
>SB_28059| Best HMM Match : DUF149 (HMM E-Value=0.71)
Length = 1043
Score = 32.3 bits (70), Expect = 0.45
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +3
Query: 129 ENKNMMNGNGNLTTSKQKTMSADEAVQKARDTFNRGTTRPIEGAVSSS 272
E NM NGNGN +Q+ + ++ Q++ + N G I GA +++
Sbjct: 585 EGGNMANGNGNQVNPQQQANTGNQVPQQSGNAGNNGDNGNIGGASNNN 632
>SB_38133| Best HMM Match : TolA (HMM E-Value=0.38)
Length = 2114
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 129 ENKNMMNGNGNLTTSKQKTMSADEAVQKARDTFNRGTTRPIEG 257
E NM NGNGN +Q+ + ++ Q++ + N G I G
Sbjct: 1671 EGGNMANGNGNQVNPQQQANTGNQVPQQSGNAGNNGDNGNIGG 1713
>SB_26122| Best HMM Match : Aldedh (HMM E-Value=0)
Length = 462
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +3
Query: 510 IGAWNYPLQLLLLPMAGAIAAGNTVIVKPSELS 608
I +W+ L +L + A+A+GN V++KPS L+
Sbjct: 158 ITSWSQALPSILRHLVPAMASGNCVVIKPSCLA 190
>SB_29610| Best HMM Match : Extensin_2 (HMM E-Value=2.3)
Length = 1353
Score = 29.1 bits (62), Expect = 4.2
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +3
Query: 96 QIDKVRESNKSENKNMMNGNGNLTTSKQKTMSA-DEAVQKARDTFNRGTTRPIEGAVSSS 272
Q + +++KS+++ +SK KT D+ Q AR + RP + + S
Sbjct: 429 QASRKSKASKSKDQGKQGARPRQASSKTKTSKPEDQDKQAARPRQSARQARPRQSSRKSK 488
Query: 273 RIC*ECTRKTKTS 311
+ +RKTKTS
Sbjct: 489 ARPRQASRKTKTS 501
>SB_31305| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 313
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -2
Query: 216 ELFGRPHQLTSSFVWMS*DSRFHSSYSCFHFYYFRALY--RFVCSH 85
EL + Q F+W+ S HSS++ +YY +L RFV S+
Sbjct: 263 ELKRKQQQEVDIFIWLDHSSCDHSSFTLIGYYYSVSLQIDRFVSSN 308
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,812,489
Number of Sequences: 59808
Number of extensions: 515426
Number of successful extensions: 1766
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1756
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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