Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0491.Seq
         (781 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    25   0.79 
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    24   1.8  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    23   4.2  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   5.6  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    22   5.6  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 596 GFHDNRVPGSDGSGHRQKQELQGI 525
           G H N  P S  SG +Q+  LQG+
Sbjct: 812 GLHINSSPSSVQSGQQQQSVLQGL 835


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 424 DXPEHPPKGFVNILDEVVIYNDP 492
           D   +PPKG  +   +V++ N P
Sbjct: 328 DSKNNPPKGAADFTAQVIVLNHP 350


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 218 RHFQSRHNQAD 250
           RHFQ +H Q+D
Sbjct: 23  RHFQDKHEQSD 33


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +1

Query: 424 DXPEHPPKGFVNILDEVVIYNDP 492
           D    PP+G  +   +V++ N P
Sbjct: 328 DSKNQPPRGAADFTAQVIVLNHP 350


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +1

Query: 424 DXPEHPPKGFVNILDEVVIYNDP 492
           D    PP+G  +   +V++ N P
Sbjct: 39  DSKNQPPRGAADFTAQVIVLNHP 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,066
Number of Sequences: 438
Number of extensions: 4525
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)