Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0491.Seq
(781 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g34240.2 68417.m04866 aldehyde dehydrogenase (ALDH3) similar ... 93 1e-19
At4g34240.1 68417.m04867 aldehyde dehydrogenase (ALDH3) similar ... 93 1e-19
At4g36250.1 68417.m05156 aldehyde dehydrogenase family protein c... 93 2e-19
At1g44170.2 68414.m05102 aldehyde dehydrogenase, putative (ALDH)... 91 8e-19
At1g44170.1 68414.m05101 aldehyde dehydrogenase, putative (ALDH)... 91 8e-19
At1g79440.1 68414.m09258 succinate-semialdehyde dehydrogenase (S... 41 8e-04
At3g48170.1 68416.m05254 betaine-aldehyde dehydrogenase, putativ... 41 0.001
At1g74920.1 68414.m08691 betaine-aldehyde dehydrogenase, putativ... 41 0.001
At3g66658.2 68416.m00781 betaine-aldehyde dehydrogenase, putativ... 40 0.002
At3g66658.1 68416.m00782 betaine-aldehyde dehydrogenase, putativ... 40 0.002
At1g23800.1 68414.m03002 aldehyde dehydrogenase, mitochondrial (... 38 0.010
At3g24503.1 68416.m03074 aldehyde dehydrogenase (ALDH1a) identic... 36 0.030
At3g48000.1 68416.m05233 aldehyde dehydrogenase (ALDH2) identica... 33 0.16
At2g24270.2 68415.m02900 NADP-dependent glyceraldehyde-3-phospha... 33 0.21
At2g24270.1 68415.m02899 NADP-dependent glyceraldehyde-3-phospha... 33 0.21
At2g14170.1 68415.m01578 methylmalonate-semialdehyde dehydrogena... 29 2.6
At1g80790.1 68414.m09479 XH/XS domain-containing protein / XS zi... 29 4.6
At5g01350.1 68418.m00048 expressed protein 28 6.0
>At4g34240.2 68417.m04866 aldehyde dehydrogenase (ALDH3) similar to
aldehyde dehydrogenase [Arabidopsis thaliana]
gi|17065876|emb|CAC84903; contains Pfam profile PF00171:
aldehyde dehydrogenase (NAD) family protein; identical
to cDNA aldehyde dehydrogenase (ALDH3 gene) GI:17065875,
aldehyde dehydrogenase [Arabidopsis thaliana]
GI:17065876
Length = 390
Score = 93.5 bits (222), Expect = 1e-19
Identities = 43/85 (50%), Positives = 58/85 (68%)
Frame = +3
Query: 510 IGAWNYPLQLLLLPMAGAIAAGNTVIVKPSELSVACSNFVVENLPKYLDNDAFIVFEGGP 689
I AWN+P L + P+ GAIAAGN V++KPSE++ A S+ + + +YLDN V EGG
Sbjct: 182 ISAWNFPFLLSVEPVIGAIAAGNAVVLKPSEIAPAASSLLAKLFSEYLDNTTIRVIEGGV 241
Query: 690 QETTELLKQRFDYIFYTGGTNVGRM 764
ETT LL Q++D IF+TGG V R+
Sbjct: 242 PETTALLDQKWDKIFFTGGARVARI 266
>At4g34240.1 68417.m04867 aldehyde dehydrogenase (ALDH3) similar to
aldehyde dehydrogenase [Arabidopsis thaliana]
gi|17065876|emb|CAC84903; contains Pfam profile PF00171:
aldehyde dehydrogenase (NAD) family protein; identical
to cDNA aldehyde dehydrogenase (ALDH3 gene) GI:17065875,
aldehyde dehydrogenase [Arabidopsis thaliana]
GI:17065876
Length = 550
Score = 93.5 bits (222), Expect = 1e-19
Identities = 43/85 (50%), Positives = 58/85 (68%)
Frame = +3
Query: 510 IGAWNYPLQLLLLPMAGAIAAGNTVIVKPSELSVACSNFVVENLPKYLDNDAFIVFEGGP 689
I AWN+P L + P+ GAIAAGN V++KPSE++ A S+ + + +YLDN V EGG
Sbjct: 182 ISAWNFPFLLSVEPVIGAIAAGNAVVLKPSEIAPAASSLLAKLFSEYLDNTTIRVIEGGV 241
Query: 690 QETTELLKQRFDYIFYTGGTNVGRM 764
ETT LL Q++D IF+TGG V R+
Sbjct: 242 PETTALLDQKWDKIFFTGGARVARI 266
>At4g36250.1 68417.m05156 aldehyde dehydrogenase family protein
contais aldehyde dehydrogenase (NADP) family protein
domain, Pfam:PF00171
Length = 484
Score = 93.1 bits (221), Expect = 2e-19
Identities = 42/85 (49%), Positives = 58/85 (68%)
Frame = +3
Query: 510 IGAWNYPLQLLLLPMAGAIAAGNTVIVKPSELSVACSNFVVENLPKYLDNDAFIVFEGGP 689
+ +WN+P+ L L P+ GAIAAGNTV++K SELS S F+ + +P YLD A V EGGP
Sbjct: 115 LSSWNFPISLSLDPLIGAIAAGNTVLLKSSELSPNASAFLAKTIPAYLDTKAIKVIEGGP 174
Query: 690 QETTELLKQRFDYIFYTGGTNVGRM 764
T LL+ ++D IF+TG +GR+
Sbjct: 175 DVATILLQHQWDKIFFTGSPKIGRI 199
>At1g44170.2 68414.m05102 aldehyde dehydrogenase, putative (ALDH)
similar to aldehyde dehydrogenase ALDH [Craterostigma
plantagineum] gi|17065918|emb|CAC84900
Length = 484
Score = 91.1 bits (216), Expect = 8e-19
Identities = 43/85 (50%), Positives = 59/85 (69%)
Frame = +3
Query: 510 IGAWNYPLQLLLLPMAGAIAAGNTVIVKPSELSVACSNFVVENLPKYLDNDAFIVFEGGP 689
I AWNYP L + P+ GAI+AGN V++KPSEL+ A S + + L +YLD A V EG
Sbjct: 119 ISAWNYPFLLSIDPVIGAISAGNAVVLKPSELAPASSALLTKLLEQYLDPSAVRVVEGAV 178
Query: 690 QETTELLKQRFDYIFYTGGTNVGRM 764
ET+ LL+Q++D IFYTG + +GR+
Sbjct: 179 TETSALLEQKWDKIFYTGSSKIGRV 203
>At1g44170.1 68414.m05101 aldehyde dehydrogenase, putative (ALDH)
similar to aldehyde dehydrogenase ALDH [Craterostigma
plantagineum] gi|17065918|emb|CAC84900
Length = 484
Score = 91.1 bits (216), Expect = 8e-19
Identities = 43/85 (50%), Positives = 59/85 (69%)
Frame = +3
Query: 510 IGAWNYPLQLLLLPMAGAIAAGNTVIVKPSELSVACSNFVVENLPKYLDNDAFIVFEGGP 689
I AWNYP L + P+ GAI+AGN V++KPSEL+ A S + + L +YLD A V EG
Sbjct: 119 ISAWNYPFLLSIDPVIGAISAGNAVVLKPSELAPASSALLTKLLEQYLDPSAVRVVEGAV 178
Query: 690 QETTELLKQRFDYIFYTGGTNVGRM 764
ET+ LL+Q++D IFYTG + +GR+
Sbjct: 179 TETSALLEQKWDKIFYTGSSKIGRV 203
>At1g79440.1 68414.m09258 succinate-semialdehyde dehydrogenase
(SSADH1) similar to succinate-semialdehyde dehydrogenase
[NADP+] (SSDH) [Escherichia coli] SWISS-PROT:P25526;
identical to succinic semialdehyde dehydrogenase mRNA,
nuclear gene encoding mitochondrial protein GI:6684441;
contains TIGRfam profile TIGR01780:succinic semialdehyde
dehydrogenase; contains Pfam profile PF00171: aldehyde
dehydrogenase (NAD) family protein
Length = 528
Score = 41.1 bits (92), Expect = 8e-04
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Frame = +3
Query: 510 IGAWNYPLQLLLLPMAGAIAAGNTVIVKPSELSVACSNFVVE-NLPKYLDNDAFIVFEGG 686
I WN+PL ++ + A+A+G TV+VKPSEL+ + E L + A V G
Sbjct: 195 ITPWNFPLAMITRKVGPALASGCTVVVKPSELTPLTALAAAELALQAGVPPGALNVVMGN 254
Query: 687 PQETTE--LLKQRFDYIFYTGGTNVGR 761
E + L + I +TG T VG+
Sbjct: 255 APEIGDALLTSPQVRKITFTGSTAVGK 281
>At3g48170.1 68416.m05254 betaine-aldehyde dehydrogenase, putative
similar to betaine-aldehyde dehydrogenase, chloroplast
precursor (BADH) [Arabidopsis thaliana]
SWISS-PROT:Q9S795
Length = 503
Score = 40.7 bits (91), Expect = 0.001
Identities = 33/99 (33%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Frame = +3
Query: 474 GYI-Q*PVRRGPRIGAWNYPLQLLLLPMAGAIAAGNTVIVKPSEL-SVACSNFVVENLPK 647
GYI + P+ I WNYPL + + +A ++AAG T I+KPSEL S+ C
Sbjct: 145 GYILKEPIGVVGMITPWNYPLLMAVWKVAPSLAAGCTAILKPSELASLTCLELADICREV 204
Query: 648 YLDNDAFIVFEG-GPQETTELLKQ-RFDYIFYTGGTNVG 758
L + G G + L D I +TG T G
Sbjct: 205 GLPPGVLNILTGLGTEAGAPLASHPHVDKIVFTGSTTTG 243
>At1g74920.1 68414.m08691 betaine-aldehyde dehydrogenase, putative
identical to betaine-aldehyde dehydrogenase, chloroplast
precursor (BADH) [Arabidopsis thaliana]
SWISS-PROT:Q9S795; strong similarity to betaine aldehyde
dehydrogenase [Amaranthus hypochondriacus] GI:2388710
Length = 501
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/37 (54%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Frame = +3
Query: 510 IGAWNYPLQLLLLPMAGAIAAGNTVIVKPSEL-SVAC 617
I WNYPL + + +A ++AAG T I+KPSEL SV C
Sbjct: 158 ITPWNYPLLMAVWKVAPSLAAGCTAILKPSELASVTC 194
>At3g66658.2 68416.m00781 betaine-aldehyde dehydrogenase, putative
similar to betaine-aldehyde dehydrogenase, chloroplast
precursor (BADH) [Spinacia oleracea] SWISS-PROT:P17202;
contains non-consensus splice site (GC) at intron 13
Length = 596
Score = 39.9 bits (89), Expect = 0.002
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Frame = +3
Query: 519 WNYPLQLLLLPMAGAIAAGNTVIVKPSELS--VACSNF--VVENLPKYLDNDAFIVFEGG 686
WNYP + PM A+ +GN +++K SE + C F + L + + G
Sbjct: 198 WNYPFHNIFNPMLAAVFSGNGIVIKVSEHASWSGCFYFRIIQAALAAVGAPENLVDVITG 257
Query: 687 PQETTELLKQRFDYIFYTGGTNVGRMFTK 773
ET E L D + + G T VG+M +
Sbjct: 258 FAETGEALVSSVDKMIFVGSTAVGKMIMR 286
>At3g66658.1 68416.m00782 betaine-aldehyde dehydrogenase, putative
similar to betaine-aldehyde dehydrogenase, chloroplast
precursor (BADH) [Spinacia oleracea] SWISS-PROT:P17202;
contains non-consensus splice site (GC) at intron 13
Length = 554
Score = 39.9 bits (89), Expect = 0.002
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Frame = +3
Query: 519 WNYPLQLLLLPMAGAIAAGNTVIVKPSELS--VACSNF--VVENLPKYLDNDAFIVFEGG 686
WNYP + PM A+ +GN +++K SE + C F + L + + G
Sbjct: 198 WNYPFHNIFNPMLAAVFSGNGIVIKVSEHASWSGCFYFRIIQAALAAVGAPENLVDVITG 257
Query: 687 PQETTELLKQRFDYIFYTGGTNVGRMFTK 773
ET E L D + + G T VG+M +
Sbjct: 258 FAETGEALVSSVDKMIFVGSTAVGKMIMR 286
>At1g23800.1 68414.m03002 aldehyde dehydrogenase, mitochondrial
(ALDH3) nearly identical to mitochondrial aldehyde
dehydrogenase ALDH3 [Arabidopsis thaliana]
gi|19850249|gb|AAL99612; contains Pfam profile PF00171:
aldehyde dehydrogenase (NAD) family protein
Length = 534
Score = 37.5 bits (83), Expect = 0.010
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Frame = +3
Query: 489 PVRRGPRIGAWNYPLQLLLLPMAGAIAAGNTVIVKPSELSVACSNFVVENLPKYLDNDAF 668
P+ +I WN+PL +L + A+A GNTV++K +E + + V + L + D
Sbjct: 191 PIGVAGQIIPWNFPLLMLSWKLGPALACGNTVVLKTAEQTPLSALLVGKLLHEAGLPDGV 250
Query: 669 IVFEGGPQETTELL---KQRFDYIFYTGGTNVGRM 764
+ G T D + +TG T+VG++
Sbjct: 251 VNIVSGFGATAGAAIASHMDVDKVAFTGSTDVGKI 285
>At3g24503.1 68416.m03074 aldehyde dehydrogenase (ALDH1a) identical
to aldehyde dehydrogenase ALDH1a [Arabidopsis thaliana]
gi|20530143|gb|AAM27004
Length = 501
Score = 35.9 bits (79), Expect = 0.030
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
Frame = +3
Query: 447 RLREHSRRGGYIQ*PVRRGPRIGAWNYPLQLLLLPMAGAIAAGNTVIVKPSELSVACSNF 626
++ S G ++ P+ I WN+P + +A A+AAG T++VKP+E + S
Sbjct: 144 KMTRQSLFGYTLKEPIGVVGNIIPWNFPSIMFATKVAPAMAAGCTMVVKPAE-QTSLSAL 202
Query: 627 VVENLPKYL---DNDAFIVFEGGPQETTELLKQR-FDYIFYTGGTNVGR 761
+L K D IV G + D + +TG T+VGR
Sbjct: 203 FYAHLSKEAGIPDGVLNIVTGFGSTAGAAIASHMDVDKVSFTGSTDVGR 251
>At3g48000.1 68416.m05233 aldehyde dehydrogenase (ALDH2) identical
to aldehyde dehydrogenase [Arabidopsis thaliana]
GI:8574427; similar to mitochondrial aldehyde
dehydrogenase [Arabidopsis thaliana]
gi|19850249|gb|AAL99612; identical to cDNA aldehyde
dehydrogenase AtALDH2a GI:20530140
Length = 538
Score = 33.5 bits (73), Expect = 0.16
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +3
Query: 489 PVRRGPRIGAWNYPLQLLLLPMAGAIAAGNTVIVKPSE 602
P+ +I WN+PL + + A+A GNT+++K +E
Sbjct: 195 PIGVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAE 232
>At2g24270.2 68415.m02900 NADP-dependent glyceraldehyde-3-phosphate
dehydrogenase, putative similar to NADP-dependent
glyceraldehyde-3-phosphate dehydrogenase
(NON-phosphorylating glyceraldehyde 3-phosphate;
glyceraldehyde-3-phosphate dehydrogenase [NADP+])
[Nicotiana plumbaginifolia] SWISS-PROT:P93338
Length = 496
Score = 33.1 bits (72), Expect = 0.21
Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Frame = +3
Query: 510 IGAWNYPLQLLLLPMAGAIAAGNTVIVK-PSELSVACSNFV 629
I +NYP+ L + +A A+ AGN++++K P++ +V+C + V
Sbjct: 165 IPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVSCLHMV 205
>At2g24270.1 68415.m02899 NADP-dependent glyceraldehyde-3-phosphate
dehydrogenase, putative similar to NADP-dependent
glyceraldehyde-3-phosphate dehydrogenase
(NON-phosphorylating glyceraldehyde 3-phosphate;
glyceraldehyde-3-phosphate dehydrogenase [NADP+])
[Nicotiana plumbaginifolia] SWISS-PROT:P93338
Length = 496
Score = 33.1 bits (72), Expect = 0.21
Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Frame = +3
Query: 510 IGAWNYPLQLLLLPMAGAIAAGNTVIVK-PSELSVACSNFV 629
I +NYP+ L + +A A+ AGN++++K P++ +V+C + V
Sbjct: 165 IPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVSCLHMV 205
>At2g14170.1 68415.m01578 methylmalonate-semialdehyde dehydrogenase,
putative similar to methylmalonate-semialdehyde
dehydrogenase [acylating], mitochondrial precursor
(MMSDH) [Rattus norvegicus] SWISS-PROT:Q02253
Length = 607
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 519 WNYPLQLLLLPMAGAIAAGNTVIVKPSELSVACSNFVVE 635
+N+P + L A+ GNT I+KPSE S + E
Sbjct: 259 FNFPAMIPLWMFPVAVTCGNTFILKPSEKDPGASVILAE 297
>At1g80790.1 68414.m09479 XH/XS domain-containing protein / XS zinc
finger domain-containing protein contains Pfam domains
PF03469: XH domain, PF03468: XS domain and PF03470: XS
zinc finger domain
Length = 634
Score = 28.7 bits (61), Expect = 4.6
Identities = 22/99 (22%), Positives = 46/99 (46%)
Frame = +2
Query: 329 KDLRRSKMEAILLEVDYLINDLRNTLHYLDEWTSRNILQKAS*TF*TRWLYTMTRTAWSS 508
++L R K+ I E + L N+L ++ L W+ + ++A + L + +
Sbjct: 306 QELSREKINRIFREKERLTNELEAKMNNLKIWSKQLDKKQALTELERQKLDEDKKKSDVM 365
Query: 509 NRRLELSLAAPAFADGRSHRCREHGYRETQRTISRLLEL 625
N L+L+ D R R + R+ + T++++L+L
Sbjct: 366 NSSLQLASLEQKKTDDRVLRLVDEHKRKKEETLNKILQL 404
>At5g01350.1 68418.m00048 expressed protein
Length = 72
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 196 MRPSKKLETLSIAAQPGR*KAPSAAQEFVKNVRGKPK 306
+R SK++E LS A R K +EF KN+ K
Sbjct: 35 VRTSKRIENLSKMAAENREKVAQQMEEFAKNIDSTKK 71
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,558,196
Number of Sequences: 28952
Number of extensions: 355085
Number of successful extensions: 1014
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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