Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0490.Seq
         (773 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    23   2.1  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    22   4.7  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   6.3  

>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -1

Query: 584 YSEAGNVSNPKFRVHYGGRVTIGPHLTV 501
           Y      SN   RVH+ G +T    LT+
Sbjct: 136 YFHIATTSNEFIRVHHSGSITRSIRLTI 163


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +1

Query: 694 TPEL*TTIKTQNFNLFVKLKII 759
           TP   T  K  NFN F KL I+
Sbjct: 345 TPNPVTNGKLYNFNTFAKLLIL 366


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 583  TLRPVTFRTLNFVSTTEVGS 524
            TLRP T   +  V+  E+GS
Sbjct: 960  TLRPATTYHIRIVAENEIGS 979


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,533
Number of Sequences: 336
Number of extensions: 4456
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20857569
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)