Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0490.Seq
(773 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 32 0.10
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c... 28 1.3
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 28 1.7
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 28 1.7
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 27 2.3
SPAC25H1.03 |mug66|mug66|meiotically upregulated gene Mug66|Schi... 27 3.0
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar... 27 3.0
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch... 27 3.9
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac... 27 3.9
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun... 26 5.2
SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 9.1
SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom... 25 9.1
SPCC1223.08c |dfr1||dihydrofolate reductase Dfr1|Schizosaccharom... 25 9.1
SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual 25 9.1
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 31.9 bits (69), Expect = 0.10
Identities = 19/53 (35%), Positives = 30/53 (56%)
Frame = -1
Query: 521 IGPHLTVLVGWYNENVISLAIHSRNSSLFLSKLLQASNSIHSSLNPDSLKALV 363
+G H ++G Y+ + L H R+ + FL+ L QAS H + PD+L+ LV
Sbjct: 349 VGSHKLTVLGLYSFLMKYLTPHQRDVTQFLACLAQAS---HEFVPPDALEPLV 398
>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 571
Score = 28.3 bits (60), Expect = 1.3
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +2
Query: 359 ARPKPSRNLDLSWNGLSWMPAKVLIRTATNS*NVLLGKLHSHCTTQRV 502
+ P S N+D S N LS +K+ + + N+ LG LH + T R+
Sbjct: 44 SEPHESANVDESVNKLSKTFSKLSLNPTFQALNMDLGLLHENITLDRI 91
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 27.9 bits (59), Expect = 1.7
Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 1/89 (1%)
Frame = +2
Query: 2 LIDTSPHRVIAF-ENTTDPNSPASDMQYHYLIFPPSSYNLLDMFRKHGLSEEVHDKFRKM 178
L+DTS H++ N + ++ ++ PP ++ LLD H +K KM
Sbjct: 1156 LLDTSMHKLFELLPNVPNDSAALGELCDVISKLPPENFALLDSLLHHLRRIIAFEKVNKM 1215
Query: 179 NENKYTMLVYNTLLKPKSAGRLLLKTRIH 265
N ++ TL P +L+ H
Sbjct: 1216 NIRNVCIVFSPTLNIPSDIFMMLILNYDH 1244
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 27.9 bits (59), Expect = 1.7
Identities = 16/64 (25%), Positives = 31/64 (48%)
Frame = -1
Query: 506 TVLVGWYNENVISLAIHSRNSSLFLSKLLQASNSIHSSLNPDSLKALVSPNLKLCCLKAL 327
T G++N +V S+A+H+ + S + + S + + P S SP+ L + L
Sbjct: 177 TFTTGYFNTSVTSVAVHNSTTVFPTSVPIVNTTSFNVTTIPSSAVHYASPSGLLALVVML 236
Query: 326 ITVY 315
I+ +
Sbjct: 237 ISAF 240
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 27.5 bits (58), Expect = 2.3
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +2
Query: 113 NLLDMFRKHGLSEEVHDKFRKMNE-NKYTMLVYNTLLKPKSAGRLLLKTRIHSTSHYCML 289
NLL+ + ++E D RK NE NK + + + L + +LLL +I S +
Sbjct: 649 NLLEQLK---MTEAEVDSLRKENEENKQVIALKESELVKSNDNKLLLNEQIESLNDQLSQ 705
Query: 290 ITTRISKICTLLSGLSN 340
+ T + + T L++
Sbjct: 706 LKTEMESVTTSKESLAD 722
>SPAC25H1.03 |mug66|mug66|meiotically upregulated gene
Mug66|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 27.1 bits (57), Expect = 3.0
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = +1
Query: 343 HSLRLGETKAFKESGFKLEWIELDACKSFDKNSDEFLECIARE---ITFSLYHPTSTVRW 513
H+ L E +++ES LE ++ + S +L +A + + + PTST W
Sbjct: 109 HTTILEEGDSYQESSLSLEAAVEQIVQAVNLRSLSYLPPVAMDSGNYPYEIVTPTSTEGW 168
Query: 514 GPMVTR 531
G ++ R
Sbjct: 169 GSLLKR 174
>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 682
Score = 27.1 bits (57), Expect = 3.0
Identities = 18/74 (24%), Positives = 31/74 (41%)
Frame = +1
Query: 289 DYYKDIEDLYTVIRAFKQHSLRLGETKAFKESGFKLEWIELDACKSFDKNSDEFLECIAR 468
D D D+Y +RAFK+ +L G ++ KL LD+ +F + + +
Sbjct: 95 DLISDQVDIYEKLRAFKKGTLESGSVVLIQKQHSKLRQ-RLDSILNFSRLQPAYHIPARK 153
Query: 469 EITFSLYHPTSTVR 510
+ Y P + R
Sbjct: 154 SVPTDAYTPMVSYR 167
>SPAC7D4.11c |sec39||secretory pathway protein Sec39
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 769
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +1
Query: 295 YKDIEDLYTVIRAFKQHSL 351
YKD DLY+ I FKQ SL
Sbjct: 389 YKDWHDLYSYIERFKQLSL 407
>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
Vps23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 487
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 128 FRKHGLSEEVHDKFRKMNENKYTMLVYN 211
F K+GL+EE+ FRK E+ +T+ N
Sbjct: 22 FWKNGLAEELELLFRKQCEDTFTLQAIN 49
>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 214
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = -3
Query: 420 AGI-QLNPFQLKSRFLEGFGLAQSQTMLFES 331
AG+ QLN F L F+EG+ +Q+ ++F++
Sbjct: 10 AGLKQLNDFLLDKSFIEGYEPSQADAVVFKA 40
>SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 269
Score = 25.4 bits (53), Expect = 9.1
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +2
Query: 41 NTTDPNSPASDMQYHYLIFPPSSYNLLDMFRKHGLS-EEVHDKFRK 175
N N ASD YL P SYN L ++ LS E+V + +K
Sbjct: 105 NVLQLNINASDNSLAYLSKPEESYNFLTIYFSTLLSYEKVENLIKK 150
>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 605
Score = 25.4 bits (53), Expect = 9.1
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = -1
Query: 257 LSSITIYPQIWVST 216
L+SITIYPQ ++ST
Sbjct: 21 LTSITIYPQCFIST 34
>SPCC1223.08c |dfr1||dihydrofolate reductase
Dfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 461
Score = 25.4 bits (53), Expect = 9.1
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 376 KESGFKLEWIELDACKSFDKNSDEFLECI 462
+++G K W E++ K+ + DE LECI
Sbjct: 67 EQNGGKFGWFEVEDFKNTYGSWDESLECI 95
>SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual
Length = 224
Score = 25.4 bits (53), Expect = 9.1
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = -3
Query: 267 EWILVFNNNLPADLGFNKVL*TSMVYLFSFILRNLSWTSSLK 142
+W +F N L A GF+ ++ Y +S L N + + K
Sbjct: 56 QWYRLFTNYLYAGTGFDFIMNIYFFYQYSTYLENFVFARNAK 97
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,343,729
Number of Sequences: 5004
Number of extensions: 74516
Number of successful extensions: 245
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -