Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0490.Seq
(773 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0127 + 988066-988171,988259-988881,988986-989396,989463-99... 33 0.33
02_02_0061 + 6468190-6471046,6471318-6471736 31 0.77
10_08_0397 + 17571492-17571664,17571875-17572034,17572140-175722... 31 1.0
10_08_0682 + 19858131-19858230,19858313-19858954,19859041-198600... 31 1.3
02_01_0315 - 2111095-2111241,2111496-2111579,2111803-2111883,211... 31 1.3
03_02_0020 - 5045900-5046211,5046233-5046290,5046604-5047242,504... 30 1.8
08_02_0598 - 19149218-19149524,19150325-19150896,19151374-191517... 30 2.3
06_03_0980 + 26520832-26520922,26521021-26521409,26521612-265219... 30 2.3
02_04_0500 + 23500769-23500951,23501200-23501285,23501442-235014... 30 2.3
01_06_1473 - 37619415-37619561,37619649-37619723,37619800-376199... 29 3.1
04_03_0515 + 16698589-16701066 29 5.4
03_05_0451 - 24456923-24457069,24457161-24457310,24457408-244575... 29 5.4
09_03_0047 - 11867302-11867356,11867461-11868032,11868485-118688... 28 7.2
07_03_0030 - 12623238-12623396,12623494-12623687,12624228-126243... 28 7.2
06_03_0848 - 25334701-25334949,25335076-25335184,25335667-253357... 28 7.2
06_02_0305 + 14111798-14111843,14112645-14113111,14113299-14113667 28 7.2
04_04_0862 + 28843654-28844386,28844486-28844895,28844995-288455... 28 7.2
01_07_0352 - 42958903-42959010,42959928-42960142,42960651-429607... 28 7.2
05_06_0138 + 25946545-25946632,25946715-25947489,25947627-259479... 28 9.5
05_01_0355 - 2774217-2774318,2774608-2774775,2774872-2775090,277... 28 9.5
>03_01_0127 +
988066-988171,988259-988881,988986-989396,989463-990037,
990137-990194
Length = 590
Score = 32.7 bits (71), Expect = 0.33
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 534 SVVDTKFRVRNVTGLRVMDASIMPSVIRGNTNAPSIMIGE-KGADMIKKHW 683
+VVD +RV V GLRV+D+S N A +M+G G + K+ W
Sbjct: 533 AVVDQDYRVLGVRGLRVVDSSTFKYSPGTNPQATVMMLGRYMGLKIQKERW 583
>02_02_0061 + 6468190-6471046,6471318-6471736
Length = 1091
Score = 31.5 bits (68), Expect = 0.77
Identities = 30/121 (24%), Positives = 52/121 (42%)
Frame = +2
Query: 104 SSYNLLDMFRKHGLSEEVHDKFRKMNENKYTMLVYNTLLKPKSAGRLLLKTRIHSTSHYC 283
++YN + GL V KF +MN N Y + ++L K K+ RL L S S
Sbjct: 440 TNYNSMTGKIPEGLGNLVSLKFIEMNNNFYEGTIPDSLGKLKNLNRLYLTNNNLSGSIPS 499
Query: 284 MLITTRISKICTLLSGLSNSIV*DWARPKPSRNLDLSWNGLSWMPAKVLIRTATNS*NVL 463
+ R+ + ++ + + P L LS+N L+ + K L + S +++
Sbjct: 500 SIGNLRMLTLLSVAGNALSGEIPPSLSNCPLEQLKLSYNNLTGLIPKELFAISVLSTSLI 559
Query: 464 L 466
L
Sbjct: 560 L 560
>10_08_0397 +
17571492-17571664,17571875-17572034,17572140-17572222,
17572333-17572468,17572515-17572610,17573105-17573218,
17573322-17573405,17573493-17573648,17573744-17573818,
17574318-17574424,17574508-17574688,17574832-17575020,
17575397-17575477,17575621-17575755,17576007-17576329,
17576503-17576608,17576734-17576883,17577034-17577180
Length = 831
Score = 31.1 bits (67), Expect = 1.0
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = -2
Query: 679 CFLIMSAPFSPIMIEGALVLPLITEGIILASITLRP---VTFRTLNFVSTTEVGSPSAPI 509
CF ++SAP + + A PLI+ G + + ++ RTL+ S+ EVGS + P
Sbjct: 558 CFQLVSAPIDELFPDDA---PLISSGFRVIPLDMKTDGTPAGRTLDLASSLEVGSTAQPT 614
Query: 508 SPYSL 494
S+
Sbjct: 615 GDASM 619
>10_08_0682 +
19858131-19858230,19858313-19858954,19859041-19860016,
19860105-19860147
Length = 586
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +3
Query: 534 SVVDTKFRVRNVTGLRVMDASIMPSVIRGNTNAPSIMIGE-KGADMIKKHW 683
+VVD +RV V GLRV+D+S N A +M+G G + + W
Sbjct: 534 AVVDDDYRVFGVQGLRVIDSSTFKYSPGTNPQATVMMLGRYMGVKIQSERW 584
>02_01_0315 -
2111095-2111241,2111496-2111579,2111803-2111883,
2112133-2112310,2112447-2112623,2112688-2112734,
2112845-2112901,2113339-2113437,2113696-2113818,
2113895-2114017,2114241-2114264,2115096-2115209,
2115315-2115503,2115691-2115857,2116846-2116930,
2117698-2117778,2118239-2118424,2119266-2119314,
2119777-2119810,2120087-2120153,2120198-2120419
Length = 777
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = -1
Query: 200 AWCIC--SRSFYGTYRGLLRLNRAYGTCPISCRSLEGILSSGTAC 72
+W +C SR+++G +GL+ R Y CP ++ +LS C
Sbjct: 618 SWAVCFTSRTWFGA-KGLIAAGRTYENCPAIRKACNFLLSKELPC 661
>03_02_0020 -
5045900-5046211,5046233-5046290,5046604-5047242,
5048475-5048515,5048672-5048728,5048952-5049140
Length = 431
Score = 30.3 bits (65), Expect = 1.8
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +1
Query: 283 YADYYKDIEDLYTVIRAFKQH 345
Y +YYK+++DL VI FK+H
Sbjct: 135 YGNYYKEVDDLRDVILHFKKH 155
>08_02_0598 -
19149218-19149524,19150325-19150896,19151374-19151762,
19151850-19152163,19152312-19152356,19153451-19153805,
19154361-19154430
Length = 683
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +3
Query: 537 VVDTKFRVRNVTGLRVMDASIMPSVIRGNTNAPSIMIG 650
VVD ++RV V+GLRV+D S + N A +M+G
Sbjct: 544 VVDQQYRVIGVSGLRVIDGSTLFRSPGTNPQATVMMMG 581
>06_03_0980 +
26520832-26520922,26521021-26521409,26521612-26521927,
26522869-26523769,26524103-26524184
Length = 592
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = +3
Query: 534 SVVDTKFRVRNVTGLRVMDASIMPSVIRGNTNAPSIMIG 650
SVVD FRV V LRV+D S N A +M+G
Sbjct: 527 SVVDRDFRVFRVRALRVVDGSTFRETPGTNPQATIMMMG 565
>02_04_0500 +
23500769-23500951,23501200-23501285,23501442-23501490,
23501560-23501746,23502214-23502371,23502447-23502515,
23502692-23502750,23503140-23503176,23503493-23503564,
23503694-23503841,23504124-23504219,23505042-23505181,
23505304-23505419,23505614-23505659,23505747-23505923
Length = 540
Score = 29.9 bits (64), Expect = 2.3
Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
Frame = +2
Query: 14 SPHRVIAFENTTDPNSPASDMQYHYLIFPPSSY-NLLDMFRKHGLSEEVHDKF-RKMNEN 187
S + I+ T+ N P S + YL PPS Y ++ M R + ++ H + R + E
Sbjct: 122 SLNNAISENETSKNNKPGSSRRLFYLALPPSVYPSVCKMIRSYCMNPSSHSGWTRVIVEK 181
Query: 188 KYTMLVYNTLLKPKSAGRLLLKTRIHSTSHY 280
+ + + G L + +++ HY
Sbjct: 182 PFGKDLESAEELSAQLGELFNEQQLYRIDHY 212
>01_06_1473 - 37619415-37619561,37619649-37619723,37619800-37619919,
37620074-37620127,37620204-37620426,37620506-37620585,
37620675-37620764,37620847-37620960,37621192-37621272,
37621383-37621490,37621677-37621722,37621802-37621899,
37621975-37622148,37622456-37622548,37623229-37623285,
37623399-37623438,37623567-37623685,37624179-37624298,
37624723-37624815,37624940-37625251,37625325-37625444,
37625545-37625658,37625731-37625910,37625996-37626110,
37626195-37626358,37626584-37626769,37626888-37626978,
37627089-37627153,37627223-37627297,37627410-37627493,
37627575-37627742,37628160-37629293
Length = 1579
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = -1
Query: 428 KLLQASNSIHSSLNPDSLKALVSPNLKLCCLKA-LITVYKSSISL 297
K++Q +S+HS P ++ AL+ N K CL+ L +YK + L
Sbjct: 1106 KVIQERDSMHSGERPVNISALMQVNKKYRCLEIDLDGIYKRMLLL 1150
>04_03_0515 + 16698589-16701066
Length = 825
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = +2
Query: 107 SYN-LLDMFRKHGLSEEVHDKFRKMNENKY--TMLVYNTLL 220
SYN L+D F K G ++ HD F KM E ++ Y++L+
Sbjct: 226 SYNALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLI 266
>03_05_0451 -
24456923-24457069,24457161-24457310,24457408-24457513,
24457715-24458040,24458129-24458263,24458350-24458430,
24458516-24458704,24458794-24458986,24459068-24459174,
24459280-24459354,24459446-24459601,24459745-24459828,
24459933-24460046,24460119-24460214,24460302-24460392,
24460500-24460615,24460878-24461037,24461964-24462217
Length = 859
Score = 28.7 bits (61), Expect = 5.4
Identities = 19/52 (36%), Positives = 24/52 (46%)
Frame = -2
Query: 679 CFLIMSAPFSPIMIEGALVLPLITEGIILASITLRPVTFRTLNFVSTTEVGS 524
C ++ AP + A +LP I L T P RTL+ ST EVGS
Sbjct: 585 CAQLVFAPIDESFADDAPLLPSGFRVIPLDGKTDAPSATRTLDLASTLEVGS 636
>09_03_0047 -
11867302-11867356,11867461-11868032,11868485-11868873,
11869018-11869331,11871028-11871382,11872004-11872076
Length = 585
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +3
Query: 537 VVDTKFRVRNVTGLRVMDASIMPSVIRGNTNAPSIMIGEKGADMI 671
VVD + RV V+G+RV+D S N A +M+G MI
Sbjct: 530 VVDQQHRVLGVSGVRVVDGSTFSRSPGTNPQATVMMMGRYFGVMI 574
>07_03_0030 -
12623238-12623396,12623494-12623687,12624228-12624332,
12625328-12625392,12626151-12626350,12626466-12626604,
12626677-12626804,12630145-12630369,12630461-12630670
Length = 474
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -3
Query: 438 VLIKTFAGIQLNPFQLKSRFLEGFGLAQSQTMLFESPDNSVQIF 307
VL+ T + L P Q + G ++S+ ++ P+N VQIF
Sbjct: 363 VLLVTPKRVNLPPLQSLRKVCSANGGSESRAVIVPQPENDVQIF 406
>06_03_0848 -
25334701-25334949,25335076-25335184,25335667-25335701,
25335793-25335843,25335941-25336018,25336214-25336351,
25336664-25336729,25337387-25337572
Length = 303
Score = 28.3 bits (60), Expect = 7.2
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Frame = +1
Query: 349 LRLGETKAFKE-SGFKLEWIELDAC----KSFDKNSDEFLECIAREITFSLYHPTSTV-- 507
+ LG + KE +G E++E+ A K+F SD F CI R ++F + S +
Sbjct: 160 INLGAVREVKEETGIDTEFVEVLAFRQSHKAFFDKSDLFFVCILRPLSFDITKQDSEIEA 219
Query: 508 -RWGPM 522
+W P+
Sbjct: 220 AQWMPV 225
>06_02_0305 + 14111798-14111843,14112645-14113111,14113299-14113667
Length = 293
Score = 28.3 bits (60), Expect = 7.2
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 8/87 (9%)
Frame = -3
Query: 450 EFVAVLIKTFAGIQLNPFQLKSR-FLEGFGLAQSQTMLFESPDN-------SVQIFDILV 295
E V L + L +L S F+EGFG+ Q T+ FE + +Q FDIL+
Sbjct: 149 ETVRELTSIMSDEWLREAELSSEPFVEGFGIVQDITVYFEDREAVLDFYVFEIQDFDILI 208
Query: 294 VISIQ*WLVEWILVFNNNLPADLGFNK 214
+ I+ ++ + +++L LG N+
Sbjct: 209 ELPIEQLIIN--MPRSDSLKITLGGNE 233
>04_04_0862 +
28843654-28844386,28844486-28844895,28844995-28845560,
28845737-28845803
Length = 591
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +3
Query: 537 VVDTKFRVRNVTGLRVMDASIMPSVIRGNTNAPSIMIG 650
VVD ++RV V LRV+D S + N A +M+G
Sbjct: 532 VVDAEYRVIGVDALRVIDGSTFNASPGTNPQATVMMLG 569
>01_07_0352 -
42958903-42959010,42959928-42960142,42960651-42960773,
42960884-42960973,42961057-42961164,42961623-42961808,
42961858-42961923,42962312-42962495
Length = 359
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -1
Query: 470 SLAIHSRNSSLFLSKLLQASNSIHSSLNPDSLKALVSPNLKLCCL 336
+L+ H R+ +L S +Q SN L S+ ++ N +L CL
Sbjct: 81 ALSSHGRSETLQTSSAVQGSNKTKYDLTGQSITNAIATNDQLSCL 125
>05_06_0138 +
25946545-25946632,25946715-25947489,25947627-25947910,
25948100-25948238,25948323-25948394,25948477-25948548,
25948726-25948806,25948894-25949054,25949162-25949424,
25949661-25949787,25949974-25950042,25950154-25950346,
25950446-25950860
Length = 912
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +2
Query: 269 TSHYCMLITTRISKICTLLSGLSNSIV*DWARPKPSRNLDLSWNGLS 409
T Y + RI+ + +GLS I +A K +NLDLS N L+
Sbjct: 415 TCSYAISTPPRITGVNMSYAGLSGDISSYFANLKEIKNLDLSHNNLT 461
>05_01_0355 -
2774217-2774318,2774608-2774775,2774872-2775090,
2775176-2775319,2775485-2775767,2775874-2775929,
2776012-2776161,2776254-2776340,2776414-2776449,
2777100-2777162,2777247-2777327,2777407-2777496,
2777690-2777767,2777855-2778058,2778139-2778186,
2778262-2778447,2779879-2779978,2780121-2780260
Length = 744
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +2
Query: 86 YLIFPPSSYNLLDMFRKHGLSEEVHDKFRKMNENKYTMLVYNTL 217
Y++ + YN+ H S++++DK+R+ E T +V +L
Sbjct: 42 YMMLYTTIYNMCTQKPPHDYSQQLYDKYRESFEEYITSMVLPSL 85
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,839,608
Number of Sequences: 37544
Number of extensions: 448602
Number of successful extensions: 1204
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1204
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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