Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0490.Seq
(773 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19862| Best HMM Match : GMC_oxred_C (HMM E-Value=4.9e-08) 66 3e-11
SB_44086| Best HMM Match : BTB (HMM E-Value=1.8e-23) 33 0.34
SB_37504| Best HMM Match : PIP5K (HMM E-Value=0) 30 1.8
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_6197| Best HMM Match : C2 (HMM E-Value=3.7e-24) 29 5.5
SB_34949| Best HMM Match : ANF_receptor (HMM E-Value=0) 28 7.3
SB_1441| Best HMM Match : I-set (HMM E-Value=0.0096) 28 7.3
SB_13470| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
SB_5128| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
SB_25797| Best HMM Match : Extensin_2 (HMM E-Value=0.55) 28 9.6
>SB_19862| Best HMM Match : GMC_oxred_C (HMM E-Value=4.9e-08)
Length = 79
Score = 66.1 bits (154), Expect = 3e-11
Identities = 32/55 (58%), Positives = 42/55 (76%)
Frame = +3
Query: 507 EMGADGDPTSVVDTKFRVRNVTGLRVMDASIMPSVIRGNTNAPSIMIGEKGADMI 671
+MG D D +VVD K RVR ++GLR++DASIMP++ GNTN+P+IMI EK A I
Sbjct: 24 KMGQDED--AVVDHKLRVRGLSGLRIVDASIMPTITSGNTNSPTIMIAEKAAAFI 76
>SB_44086| Best HMM Match : BTB (HMM E-Value=1.8e-23)
Length = 417
Score = 32.7 bits (71), Expect = 0.34
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = -1
Query: 281 NNGLSNGFLSSITIYPQIWVSTKYCKRAWCICSRSFYG 168
N NGF+ S I +TKYC RAW S+YG
Sbjct: 356 NGSYYNGFVVSFDHPVTILPNTKYCLRAWINGPNSYYG 393
>SB_37504| Best HMM Match : PIP5K (HMM E-Value=0)
Length = 2119
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/52 (25%), Positives = 27/52 (51%)
Frame = +1
Query: 295 YKDIEDLYTVIRAFKQHSLRLGETKAFKESGFKLEWIELDACKSFDKNSDEF 450
Y+++ L+ + H+ ++A+KES FK W+ + CK + ++F
Sbjct: 92 YRNLSALFRRLSVIADHTKEGQLSQAYKESDFKQYWMPDETCKECYECGEKF 143
>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 762
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -1
Query: 437 FLSKLLQASNSIHSSLNPDSLKALVSPNLKLCCLKALITV-YKSSISL 297
FL K+L ++ ++ DSL +LVS N LC K+ + V KS I +
Sbjct: 59 FLRKVLDIRDNRENARTSDSLSSLVSSNEALCKCKSKLEVRVKSGIEI 106
>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2834
Score = 29.5 bits (63), Expect = 3.2
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = -2
Query: 694 CVCSQCFLIMSAPFSPIMIEGALVLPLITEGIILASITLRPVTFRTLNFVSTTE-VGSPS 518
C+ Q + S P P + + + L GI+ AS+ L+P R + +STT+ V
Sbjct: 2054 CLTQQTSTLTSTPAKPAVSQPIKIARLQNPGIVTASLALKP---RQVQPISTTKYVPIGP 2110
Query: 517 APISPYSLG 491
PI P G
Sbjct: 2111 KPILPNPSG 2119
>SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3297
Score = 29.5 bits (63), Expect = 3.2
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = -2
Query: 649 PIMIEGALVLPLITEGIILASITLRPVTFRTLNFVSTTEV--GSPSAPISPYSLGGT 485
PI +G P+IT+G +A ++ T ++ TT V + I+P S GT
Sbjct: 1942 PISTDGLTAAPMITDGTTVAPMSTDKTTTAPMSTDGTTSVPISTDGTTIAPMSTDGT 1998
>SB_6197| Best HMM Match : C2 (HMM E-Value=3.7e-24)
Length = 569
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = +1
Query: 256 KNP-FDKPLLYADYYKDIEDLYT 321
KNP FD+PL + D Y E+LYT
Sbjct: 394 KNPNFDQPLFFFDVYLPKEELYT 416
>SB_34949| Best HMM Match : ANF_receptor (HMM E-Value=0)
Length = 879
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = -1
Query: 590 VHYSEAGNVSNPKFRV-HYGGRVTIGPHLTVLVGWYNENVISLAIHSRNSS 441
V++S+ GN ++ + V H+ T GP +VG + ++ + A+ S N S
Sbjct: 429 VYFSDQGNPADSFYDVVHFRSSETTGPFSVQIVGSWRQSDLKPALFSVNQS 479
>SB_1441| Best HMM Match : I-set (HMM E-Value=0.0096)
Length = 249
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = +2
Query: 137 HGLSEEVHDKFRKMNENKYTMLVYNTLLKPKSAGRLLLKT---RIHSTSHYCM 286
HG S ++ K R Y + + LL+ S+G+L++KT R H ++ C+
Sbjct: 60 HGESLKMECKARANPAPSYAFFLNDNLLQNTSSGQLVIKTASSRFHGGTYSCV 112
>SB_13470| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1483
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 316 TNLRYPCSNQHTIMACRMDSCLQ*QSTRRFGFQQ 215
TN+R+ C ++H I A D C Q R++G Q
Sbjct: 1374 TNVRFTCDDRHLISA-GGDDCCQSSRNRQYGKHQ 1406
>SB_5128| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2102
Score = 27.9 bits (59), Expect = 9.6
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = -1
Query: 560 NPKFRVHYGGRVTIGPHLTVLVGWYNENVISLAIHSRNSSLFLSKLLQASNSI--HSSLN 387
N HY G + LTVL G + V+ LA +S++ L + I H+ LN
Sbjct: 1251 NTSSSCHYDGYENL---LTVLSG---QKVVLLANYSQSELFHLDLKKTVTEKIIPHAPLN 1304
Query: 386 PDSLKALVSPNL 351
P+++ + PNL
Sbjct: 1305 PEAIDLMRMPNL 1316
>SB_25797| Best HMM Match : Extensin_2 (HMM E-Value=0.55)
Length = 910
Score = 27.9 bits (59), Expect = 9.6
Identities = 20/64 (31%), Positives = 33/64 (51%)
Frame = -1
Query: 425 LLQASNSIHSSLNPDSLKALVSPNLKLCCLKALITVYKSSISL**SAYNNGLSNGFLSSI 246
LL ASN + S+L + + V P+L CL++ +++ +A NGL+ S I
Sbjct: 833 LLTASNGLASNLALVNSRTYVPPSLAGDCLRSAKHFGDPTLTAMSTANRNGLNYPMDSLI 892
Query: 245 TIYP 234
T+ P
Sbjct: 893 TVAP 896
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,598,884
Number of Sequences: 59808
Number of extensions: 525856
Number of successful extensions: 1417
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1414
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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