Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0490.Seq
         (773 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66494-4|CAA91263.1|  599|Caenorhabditis elegans Hypothetical pr...    56   2e-08
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    30   2.1  
AC006619-2|AAK68254.1|  434|Caenorhabditis elegans Hypothetical ...    29   3.7  
Z49068-2|CAA88855.1|  389|Caenorhabditis elegans Hypothetical pr...    29   4.9  
AF047659-10|AAC04430.1|  798|Caenorhabditis elegans Hypothetical...    29   4.9  
U67864-1|AAC47313.1|  415|Caenorhabditis elegans MEX-3 protein.        28   6.4  
AF098997-6|AAC68716.1|  410|Caenorhabditis elegans Hypothetical ...    28   6.4  
AF003139-9|AAK73872.1|  415|Caenorhabditis elegans Muscle excess...    28   6.4  
AF003139-8|AAK73873.2|  443|Caenorhabditis elegans Muscle excess...    28   6.4  
AF077529-1|AAC26253.1|  690|Caenorhabditis elegans Hypothetical ...    28   8.5  

>Z66494-4|CAA91263.1|  599|Caenorhabditis elegans Hypothetical
           protein C34C6.4 protein.
          Length = 599

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 26/57 (45%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
 Frame = +3

Query: 507 EMGADGDPTSVVDTK-FRVRNVTGLRVMDASIMPSVIRGNTNAPSIMIGEKGADMIK 674
           +MG++ D  +VV+ +   V     L+V+DAS+MPS++ GN NAP IM+ E+ AD+IK
Sbjct: 526 KMGSENDKMAVVNPETMGVYGTENLKVVDASVMPSIVSGNLNAPVIMMAERAADLIK 582


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 9/64 (14%)
 Frame = -1

Query: 413  SNSIHSSLNPDSLKALVS------PNLKLCCLKALITVYKSSISL**SAY---NNGLSNG 261
            +NS+H ++  DSL  +VS       NL  CC +    V+ SSI+    +Y   N   SNG
Sbjct: 5076 NNSLHENVKRDSLDEMVSIKLQGAKNLMKCCDETSHFVFSSSIANVLGSYGQSNYAFSNG 5135

Query: 260  FLSS 249
             ++S
Sbjct: 5136 LVTS 5139


>AC006619-2|AAK68254.1|  434|Caenorhabditis elegans Hypothetical
           protein C46C11.2 protein.
          Length = 434

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = -1

Query: 476 VISLAIHSRNSSLFLSKLLQASNSIHSSLNPDSLKALVSP 357
           +I LAI S    + +  L QAS  I +SL P SL  L++P
Sbjct: 289 IICLAILSMTGCVLMIGLAQASWLIFASLAPGSLHGLLNP 328


>Z49068-2|CAA88855.1|  389|Caenorhabditis elegans Hypothetical
           protein K01C8.2 protein.
          Length = 389

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = -1

Query: 170 GTYRGLLRLNRAYGTCPISCRSLEGILSSGTACQKQESSGRLC 42
           G+  G +  + +  TCP     ++  L+S   C +  SS R+C
Sbjct: 141 GSNGGTVSCSPSVSTCPSGSSCMQSTLNSAFICCRSSSSQRIC 183


>AF047659-10|AAC04430.1|  798|Caenorhabditis elegans Hypothetical
           protein K07H8.10 protein.
          Length = 798

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 161 DKFRKMNENKYTMLVYNTLLKPKSAGRLLLKTRIHSTSHY 280
           D FR+   + +  LV+NT+   K A  +L K++I   + Y
Sbjct: 577 DSFRRKKNSNFGWLVFNTVADCKKAHDVLSKSKIQGKALY 616


>U67864-1|AAC47313.1|  415|Caenorhabditis elegans MEX-3 protein.
          Length = 415

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -1

Query: 488 YNENVISLAIHSRNSSLFLSKLLQASNSIHSSLNPDSL 375
           +N+  +S +     SSL L  LL++  S+ SSL P+SL
Sbjct: 256 FNQKEMSSSPFGMESSLGLDALLRSFPSMRSSLTPESL 293


>AF098997-6|AAC68716.1|  410|Caenorhabditis elegans Hypothetical
           protein T10D4.3 protein.
          Length = 410

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -1

Query: 701 SGVRVQPVFLDHVSSFLTDHDRRSVSITSDYGRHYTSVHYS 579
           S V ++  FL+ +SSFL  H+   V I   +       HYS
Sbjct: 138 SNVEMKKAFLNSISSFLAYHELHGVDIFWKWPSPEDKAHYS 178


>AF003139-9|AAK73872.1|  415|Caenorhabditis elegans Muscle excess
           protein 3, isoform a protein.
          Length = 415

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -1

Query: 488 YNENVISLAIHSRNSSLFLSKLLQASNSIHSSLNPDSL 375
           +N+  +S +     SSL L  LL++  S+ SSL P+SL
Sbjct: 256 FNQKEMSSSPFGMESSLGLDALLRSFPSMRSSLTPESL 293


>AF003139-8|AAK73873.2|  443|Caenorhabditis elegans Muscle excess
           protein 3, isoform b protein.
          Length = 443

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -1

Query: 488 YNENVISLAIHSRNSSLFLSKLLQASNSIHSSLNPDSL 375
           +N+  +S +     SSL L  LL++  S+ SSL P+SL
Sbjct: 284 FNQKEMSSSPFGMESSLGLDALLRSFPSMRSSLTPESL 321


>AF077529-1|AAC26253.1|  690|Caenorhabditis elegans Hypothetical
           protein C09E8.3 protein.
          Length = 690

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = -2

Query: 673 LIMSAPFSPIMIEGALVLPLITEGIILASITLRPVTFRTLNFVSTTEVGSPSAPISPYSL 494
           +++   F+PI++   ++ PLI    +   + L P     L  + T  VGSP   +SP+ L
Sbjct: 593 ILVPGVFNPIILSPLVLSPLILSPQVFTPLILSPFALNPL--ILTPMVGSPLI-LSPFVL 649


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,232,425
Number of Sequences: 27780
Number of extensions: 408829
Number of successful extensions: 1232
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1232
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)