Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0490.Seq
         (773 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    62   6e-12
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   3.2  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   3.2  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   3.2  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   9.6  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   9.6  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   9.6  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   9.6  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 62.1 bits (144), Expect = 6e-12
 Identities = 28/59 (47%), Positives = 37/59 (62%)
 Frame = +3

Query: 507 EMGADGDPTSVVDTKFRVRNVTGLRVMDASIMPSVIRGNTNAPSIMIGEKGADMIKKHW 683
           +MG   DP +VV  + +V  + GLRV DAS+ P VI GN  A   M+GE+ AD IK+ W
Sbjct: 550 KMGPSYDPMAVVSPRLKVHGIRGLRVADASVQPQVISGNPVASVNMVGERAADFIKEDW 608



 Score = 50.8 bits (116), Expect = 1e-08
 Identities = 26/95 (27%), Positives = 49/95 (51%)
 Frame = +1

Query: 235 G*IVIEDKNPFDKPLLYADYYKDIEDLYTVIRAFKQHSLRLGETKAFKESGFKLEWIELD 414
           G I +  K+P D P+++++      D   +I+A +    +L  T   ++ G + + IEL 
Sbjct: 460 GRITLNSKDPLDPPVIWSNDLATEHDRSVMIQAIRVVQ-KLVNTTVMRDLGVEFQKIELK 518

Query: 415 ACKSFDKNSDEFLECIAREITFSLYHPTSTVRWGP 519
            C  F ++SD++  C+ +  T +  H T T + GP
Sbjct: 519 QCDEFVEDSDDYWNCVIQYNTRAENHQTGTAKMGP 553


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -1

Query: 584 YSEAGNVSNPKFRVHYGGRVTIGPHLTV 501
           Y      SN   R+H+ G +T    LT+
Sbjct: 107 YFHIATTSNEFIRIHHSGSITRSIRLTI 134


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -1

Query: 584 YSEAGNVSNPKFRVHYGGRVTIGPHLTV 501
           Y      SN   R+H+ G +T    LT+
Sbjct: 107 YFHIATTSNEFIRIHHSGSITRSIRLTI 134


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -1

Query: 584 YSEAGNVSNPKFRVHYGGRVTIGPHLTV 501
           Y      SN   R+H+ G +T    LT+
Sbjct: 46  YFHIATTSNEFIRIHHSGSITRSIRLTI 73


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 284 YNNGLSNGFLSSITIYPQIWVSTKY 210
           Y+N     FL++I  Y  IW+   Y
Sbjct: 124 YSNRSQYEFLNAIHHYDDIWLPDTY 148


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 284 YNNGLSNGFLSSITIYPQIWVSTKY 210
           Y+N     FL++I  Y  IW+   Y
Sbjct: 124 YSNRSQYEFLNAIHHYDDIWLPDTY 148


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 284 YNNGLSNGFLSSITIYPQIWVSTKY 210
           Y+N     FL++I  Y  IW+   Y
Sbjct: 175 YSNRSQYEFLNAIHHYDDIWLPDTY 199


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 284 YNNGLSNGFLSSITIYPQIWVSTKY 210
           Y+N     FL++I  Y  IW+   Y
Sbjct: 124 YSNRSQYEFLNAIHHYDDIWLPDTY 148


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,964
Number of Sequences: 438
Number of extensions: 5568
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)