Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0489.Seq
         (771 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    25   0.51 
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    25   0.51 
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    25   0.51 
DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory pro...    25   0.88 
DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory pro...    22   4.7  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    22   6.2  

>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 25.4 bits (53), Expect = 0.51
 Identities = 18/64 (28%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
 Frame = +1

Query: 532 DITMLGGHSSHSYQNGTNMY-FVYDY-NVVDCKPEEEIDKYHNPLNKIICEETIRLGGSM 705
           D+ M G HS H      N Y +  D  N     P      Y +P      EET      +
Sbjct: 4   DVGMYGHHSQHGTYPSDNYYNYTSDIPNAQQMPPHYSNYHYEDPYGYTGSEETPPSPQEV 63

Query: 706 VHHH 717
            +HH
Sbjct: 64  YYHH 67


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 25.4 bits (53), Expect = 0.51
 Identities = 18/64 (28%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
 Frame = +1

Query: 532 DITMLGGHSSHSYQNGTNMY-FVYDY-NVVDCKPEEEIDKYHNPLNKIICEETIRLGGSM 705
           D+ M G HS H      N Y +  D  N     P      Y +P      EET      +
Sbjct: 4   DVGMYGHHSQHGTYPSDNYYNYTSDIPNAQQMPPHYSNYHYEDPYGYTGSEETPPSPQEV 63

Query: 706 VHHH 717
            +HH
Sbjct: 64  YYHH 67


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 25.4 bits (53), Expect = 0.51
 Identities = 18/64 (28%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
 Frame = +1

Query: 532 DITMLGGHSSHSYQNGTNMY-FVYDY-NVVDCKPEEEIDKYHNPLNKIICEETIRLGGSM 705
           D+ M G HS H      N Y +  D  N     P      Y +P      EET      +
Sbjct: 4   DVGMYGHHSQHGTYPSDNYYNYTSDIPNAQQMPPHYSNYHYEDPYGYTGSEETPPSPQEV 63

Query: 706 VHHH 717
            +HH
Sbjct: 64  YYHH 67


>DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory
           protein 11 protein.
          Length = 127

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +1

Query: 640 DKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLE 756
           D  H   +K  C ET + G   +  H I   R  W++LE
Sbjct: 69  DALHTECSK--CSETQKNGSKKIMRHLIDHKRDWWNELE 105


>DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory
           protein 10 protein.
          Length = 129

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +1

Query: 640 DKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLE 756
           D  H+  +K  C E  + G   + H+ I   R  W++LE
Sbjct: 69  DALHSGCSK--CTEKQKEGSRKIIHYLIDNKRDWWNELE 105


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +3

Query: 354 SKPGLTT*TGDRIKWLPNVCRSSKPATW 437
           S P ++   G   KWLP +   S P+ W
Sbjct: 200 SLPSISPSGGFLPKWLPPLQGFSDPSAW 227


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,974
Number of Sequences: 336
Number of extensions: 4543
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20753800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)