Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0489.Seq
         (771 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    26   6.9  
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces...    26   6.9  
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc...    26   6.9  
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch...    26   6.9  
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy...    25   9.1  

>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
 Frame = -1

Query: 501 LITLS*ISWMQLQQPD--TSVVKPMLPVLRICTRSAATLSGPQFRLLNQVSIS 349
           L+T+S   W++L      TSVVK +  +L+IC +    +S     ++++ SI+
Sbjct: 764 LVTVS--YWLKLTDSSLLTSVVKVICKMLKICKKLECPISQNVIDIIHRASIT 814


>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 583

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = +3

Query: 36  LCYITEVTVKIFKFTPE---NNLFYGYILEDMKTGFNILREIMVEGYRPSIARLYDAEDG 206
           LC + E  V +F    +   N+ F GY+   +   F I  +I    + PS+++L D + G
Sbjct: 496 LCLMAEFYVSLFPIGSKPNANDFFQGYLAAPIVIAFFIGYKIYDRSHIPSLSKL-DLDTG 554

Query: 207 TQHF 218
            + +
Sbjct: 555 LRTY 558


>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
           Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 577 GTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICE 678
           G NMY  + +  VD K  E++  ++ PL++ I E
Sbjct: 280 GRNMYSFFAFMYVDEKEWEKLKSFNVPLSERIVE 313


>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
           Nak1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +1

Query: 565 SYQNGTNMYFVYDY-NVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGI 723
           SY  GTN++ + DY +    +   E      P   +I  ET++     +HH GI
Sbjct: 77  SYLVGTNLWIIMDYCHGGSVRTLMEAGPISEPCISLILRETLQ-ALKFIHHAGI 129


>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 402 PNVCRSSKPATWALPP 449
           P++C  + PATW+ PP
Sbjct: 122 PSLCSFTLPATWSEPP 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,311,307
Number of Sequences: 5004
Number of extensions: 71450
Number of successful extensions: 213
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)