Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0489.Seq
(771 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0450 - 3395644-3395837,3396164-3396190,3396266-3396396,339... 33 0.25
10_07_0190 + 13931399-13931600,13931720-13932003,13932158-13933303 29 5.4
01_07_0290 - 42542201-42542359,42542443-42542551,42542729-425435... 29 5.4
12_02_1072 + 25834719-25834908,25837822-25838099,25839265-25839798 28 7.2
09_04_0159 + 15213752-15214028,15214158-15214399 28 7.2
02_01_0102 - 749122-749799,750123-750371,750753-750851,751380-75... 28 7.2
01_06_1342 - 36438869-36439459,36439567-36439627,36440751-364411... 28 7.2
09_04_0696 - 19559227-19559622,19559710-19559862,19559957-195607... 28 9.5
04_01_0625 - 8222105-8222462,8222574-8222926,8223029-8223204,822... 28 9.5
04_01_0624 - 8202783-8203140,8203242-8203594,8203697-8203872,820... 28 9.5
04_01_0399 - 5214183-5214206,5215437-5215502,5219537-5219635,521... 28 9.5
>07_01_0450 -
3395644-3395837,3396164-3396190,3396266-3396396,
3396612-3396691,3397283-3397345,3397588-3397697,
3398316-3398424,3398783-3398857,3399363-3399459,
3399622-3399683,3399966-3400026,3400330-3400469,
3400747-3400839,3401345-3401393,3401534-3401634,
3401723-3401816,3401904-3402139
Length = 573
Score = 33.1 bits (72), Expect = 0.25
Identities = 20/64 (31%), Positives = 34/64 (53%)
Frame = +3
Query: 3 IRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDMKTGFNILREIMVEGYRPSIA 182
+ +IIG+EG L ITEVTV++ K P +++ + +K ++ M+ G + S
Sbjct: 282 LARLIIGSEGTLGVITEVTVRLQKL-PSHSVVAMCNFQTIKDAADVAIATMLSGIQVSRV 340
Query: 183 RLYD 194
L D
Sbjct: 341 ELLD 344
>10_07_0190 + 13931399-13931600,13931720-13932003,13932158-13933303
Length = 543
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 418 PQNRQHGLYHRSIRLLELHPRNLRKRY 498
P +R H + IR+L+ HP L ++Y
Sbjct: 44 PLSRAHDAFFHDIRILDFHPAELYEKY 70
>01_07_0290 - 42542201-42542359,42542443-42542551,42542729-42543516,
42543601-42543744,42543840-42544013,42544056-42544369,
42544467-42544636,42544916-42545043,42545125-42545185,
42545473-42545642,42545783-42547387,42547479-42547631,
42547747-42547905,42548066-42548236,42548357-42548404,
42548509-42548624,42548885-42549029,42549122-42549220
Length = 1570
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = -3
Query: 616 QRRCNRRRSTCWCRSDSYERNDRPAW*CRRRAGTQYNTV 500
QRR + +S W SD+ +++D+P+W AGTQ T+
Sbjct: 1331 QRRQLKTKSN-W-NSDATQQDDKPSWYSSNSAGTQNFTI 1367
>12_02_1072 + 25834719-25834908,25837822-25838099,25839265-25839798
Length = 333
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 766 ARRVPVCSSERDVYRYRGGAPSNRRGEWFLH 674
ARR + + + Y+G AP R+ EW +H
Sbjct: 108 ARRGALVGMRKTLVFYQGRAPKGRKTEWVMH 138
>09_04_0159 + 15213752-15214028,15214158-15214399
Length = 172
Score = 28.3 bits (60), Expect = 7.2
Identities = 20/68 (29%), Positives = 27/68 (39%)
Frame = +1
Query: 514 EFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIRL 693
E P A TM HS S ++G + V DY +E +H E R
Sbjct: 30 ELPGAARSTMAAAHSDVSVRHGNGKFPVGDYTTRPASADENFPHHHQ-------REMQR- 81
Query: 694 GGSMVHHH 717
G++ HHH
Sbjct: 82 -GNIFHHH 88
>02_01_0102 - 749122-749799,750123-750371,750753-750851,751380-751889,
752025-753905,754093-754296,754807-754899,755036-755122,
755241-755328,755533-755645,755943-757259,757398-758672,
759166-759273
Length = 2233
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +1
Query: 412 ADPQNRQHGLYHRSIRLLELHPRNLRKRY*PYCTEFPHADDITMLG-GHSSHSYQNGTN 585
ADP +RQ HR+++ RN+ R P T+ ++ G G + HS +N +N
Sbjct: 1816 ADPASRQQDTVHRTVK----QKRNMPSRKAPPATKAGKMTQLSGSGEGSAEHSKENWSN 1870
>01_06_1342 -
36438869-36439459,36439567-36439627,36440751-36441130,
36441955-36442761
Length = 612
Score = 28.3 bits (60), Expect = 7.2
Identities = 21/83 (25%), Positives = 29/83 (34%)
Frame = +3
Query: 522 ARRRHHHAGRSFLS*LSERHQHVXXXXXXXXXXXAGRGNRQVPQSAQQDHL*RNHSPRRF 701
A HHH G + L QHV AG VPQ ++++ L P
Sbjct: 18 AEHHHHHHGHAGHLLLHHHPQHVAGAAVAAAAAAAGGQMYHVPQHSRREKL--RFPPDAG 75
Query: 702 DGAPPRYR*TSRSLEQTGTRRAW 770
D PP + +Q +W
Sbjct: 76 DSPPPHGHGHGHAPQQQQQHGSW 98
>09_04_0696 -
19559227-19559622,19559710-19559862,19559957-19560784,
19561727-19561842,19562286-19562319
Length = 508
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/43 (23%), Positives = 23/43 (53%)
Frame = -2
Query: 137 VEAGFHVFQDIAVEEVVFRGEFKDFHCYFSDIAQCTFVADDDV 9
+E +H+ ++ +VE + F+ F C + +C+ + DD+
Sbjct: 421 LELTYHILENTSVECLTLDTSFESFRCSPGKLGRCSRMPKDDL 463
>04_01_0625 -
8222105-8222462,8222574-8222926,8223029-8223204,
8223318-8223555,8226983-8227423
Length = 521
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 147 EIMVEGYRPSIARLYDAEDGTQHFTHFADG 236
++ V GY S+A LY +E + HF DG
Sbjct: 412 QLAVIGYSESLANLYTSELRAKWLAHFMDG 441
>04_01_0624 -
8202783-8203140,8203242-8203594,8203697-8203872,
8203993-8204230,8208308-8208748
Length = 521
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 147 EIMVEGYRPSIARLYDAEDGTQHFTHFADG 236
++ V GY S+A LY +E + HF DG
Sbjct: 412 QLAVIGYSESLANLYTSELRAKWLAHFMDG 441
>04_01_0399 -
5214183-5214206,5215437-5215502,5219537-5219635,
5219746-5219817,5219918-5220491,5220575-5220687,
5220842-5220941,5221059-5221181,5221268-5221335,
5221461-5221610,5221715-5221858,5222097-5222288,
5222710-5222794,5222892-5223043,5223138-5223296,
5223552-5223605,5223698-5223836,5223955-5224088,
5224200-5225117
Length = 1121
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = -3
Query: 232 SAKWVKCWVPSSASYKRAIDGRYPSTMISRRMLKPVFM 119
S +W KC VP +S K I G+ + R+++ + +
Sbjct: 311 STEWTKCLVPLVSSSKVKIQGKIVFPTVELRLMQEILL 348
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,209,910
Number of Sequences: 37544
Number of extensions: 541316
Number of successful extensions: 1578
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1578
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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