Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0489.Seq
(771 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41) 41 0.001
SB_6743| Best HMM Match : Mab-21 (HMM E-Value=0.086) 32 0.45
SB_3866| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.59
SB_24810| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.78
SB_30324| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_12833| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_38824| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 29 3.1
SB_21330| Best HMM Match : JmjC (HMM E-Value=0.0054) 29 5.5
SB_54228| Best HMM Match : TBCC (HMM E-Value=7.8) 28 7.3
SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_17504| Best HMM Match : BCCT (HMM E-Value=1.4e-14) 28 7.3
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 28 9.6
SB_21299| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
SB_5377| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
SB_54262| Best HMM Match : CXC (HMM E-Value=5) 28 9.6
>SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)
Length = 482
Score = 40.7 bits (91), Expect = 0.001
Identities = 22/66 (33%), Positives = 35/66 (53%)
Frame = +3
Query: 3 IRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDMKTGFNILREIMVEGYRPSIA 182
+ H I+G+EG L ITEVT++I + PE ++ + D + G +R + P+
Sbjct: 311 LHHFIMGSEGTLGVITEVTLRI-RPVPEIRVYGSVVFPDFEKGVACMRAVAHARCAPASV 369
Query: 183 RLYDAE 200
RL D E
Sbjct: 370 RLMDNE 375
Score = 38.3 bits (85), Expect = 0.007
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = +1
Query: 559 SHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRV 738
+ +Y G +YF + +N + ++ + +E + GGS+ HHHG+GK R
Sbjct: 392 TQTYDAGACVYFYFGFNYYGLADPLNV---YDAIESAARDEILANGGSLSHHHGVGKLRK 448
Query: 739 HW 744
W
Sbjct: 449 KW 450
>SB_6743| Best HMM Match : Mab-21 (HMM E-Value=0.086)
Length = 412
Score = 32.3 bits (70), Expect = 0.45
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +1
Query: 583 NMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIR 690
N YF+ D N++D + ID N L+KII ET R
Sbjct: 368 NNYFITDLNLLDDLNDSNIDNIANRLDKIIQNETER 403
>SB_3866| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1178
Score = 31.9 bits (69), Expect = 0.59
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +2
Query: 389 DKVAAERVQILKTGNMGFTTEVS-GCWSCIHEIYESVINRIV 511
D V+ E VQIL+TGN + S GC + IY+S+ N ++
Sbjct: 1057 DVVSGEFVQILRTGNSHWVCASSVGCEPGMVNIYDSLYNNVI 1098
>SB_24810| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 497
Score = 31.5 bits (68), Expect = 0.78
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 11/58 (18%)
Frame = -3
Query: 283 LRNARVTFSQKISTHFPSAK------WVKCWVP-----SSASYKRAIDGRYPSTMISR 143
L+N R ++Q + + S K W+KCW SSAS++ +GR PS I R
Sbjct: 239 LKNERDVYAQALLEYLDSVKTSSTSRWLKCWRATTDGWSSASFRSGCNGRGPSVTIVR 296
>SB_30324| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = -2
Query: 248 QHAFSVGKMGEVLGAIFSVIQTSD*RTIPFHHD 150
+HAFSV K+ +VLG ++ +T ++I + HD
Sbjct: 34 EHAFSVHKIPDVLGCLYKCQRTPQCQSINYLHD 66
>SB_12833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 498
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/40 (35%), Positives = 26/40 (65%)
Frame = +3
Query: 42 YITEVTVKIFKFTPENNLFYGYILEDMKTGFNILREIMVE 161
Y ++ K+F+F EN LF+ + L++ TG L+E+++E
Sbjct: 173 YSFKLGAKVFRFLYENFLFHDFSLQNFSTG---LQEVIIE 209
>SB_38824| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 604
Score = 29.5 bits (63), Expect = 3.1
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Frame = -3
Query: 322 VAGNDFRNPFARHLRNARVTFSQ--KISTHFPSAKWVKCW-VPSSASYKRAI-DGRYPST 155
+AGN RN +H +A F + + + SA V+ + V S+ S + DGR P
Sbjct: 233 MAGNRDRNGVVKHPVSAAAMFVRFYPLEISWASALRVEIYGVQSACSNPLGMEDGRIPDD 292
Query: 154 MISRRMLKPVFMSS 113
IS KP F SS
Sbjct: 293 KISSSSSKPAFFSS 306
>SB_21330| Best HMM Match : JmjC (HMM E-Value=0.0054)
Length = 304
Score = 28.7 bits (61), Expect = 5.5
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = -2
Query: 317 GQRFPQSLRPSPSQCEGYLQPKDQHAFSVGKMGEVLGAIFSVIQTSD*RTIPFHHDFTQD 138
G++ Q L P +GY+ ++ AFS+ KM EVL F I S+ + H +D
Sbjct: 212 GRKLMQYLDPDN---KGYILKEEIEAFSIEKMKEVL-LFFDPIDVSNMEDFEYSHINAED 267
Query: 137 V 135
+
Sbjct: 268 I 268
>SB_54228| Best HMM Match : TBCC (HMM E-Value=7.8)
Length = 330
Score = 28.3 bits (60), Expect = 7.3
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Frame = +1
Query: 511 TEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDC-----KPEEEIDKYHN 654
TEF DD LGG +H N N YDY+ + KP + ID+ H+
Sbjct: 53 TEFRTGDDFRFLGGPINHGLGNVYN----YDYHGLSSSNDKYKPYDTIDQLHD 101
>SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4247
Score = 28.3 bits (60), Expect = 7.3
Identities = 18/42 (42%), Positives = 24/42 (57%)
Frame = +3
Query: 54 VTVKIFKFTPENNLFYGYILEDMKTGFNILREIMVEGYRPSI 179
VTV+ FK P + YG +LED GF+ ++ GYR SI
Sbjct: 1192 VTVRRFKHKPAHLKQYGVLLED--PGFHHKLLEIICGYRASI 1231
>SB_17504| Best HMM Match : BCCT (HMM E-Value=1.4e-14)
Length = 327
Score = 28.3 bits (60), Expect = 7.3
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = +1
Query: 40 AISLK*Q*KSLNS--PRKTTSSTAISWKT*KPASTSCVKSWWKGIVRQSLVCMTLKM 204
AI L LNS P+ TS AI W A+ S + GI R S +C +L M
Sbjct: 87 AIQLNDGLNRLNSDIPKSATSQVAIIWVITAVATASVISGIKIGIRRLSEICFSLGM 143
>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 6725
Score = 27.9 bits (59), Expect = 9.6
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 643 CRFPLPAYSQRRCNRRRSTCWC 578
C+ P +YS+R+CN + CWC
Sbjct: 2789 CKNPDGSYSKRQCNNGK--CWC 2808
>SB_21299| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2630
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -1
Query: 477 WMQLQQPDTSVVKPMLPVLRICTRSAATLSGP-QFRLLNQVSISL 346
W+Q+ ++ V P P +R CT + P R+LNQ S S+
Sbjct: 579 WVQIAVFNSKGVGPRSPAVRRCTDQDVPSAPPSNLRVLNQTSTSI 623
>SB_5377| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 101
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
Frame = -3
Query: 610 RCNRRRSTCWC---RSDSYERNDR 548
+C+R CWC RSDSY R+ R
Sbjct: 57 KCSRTTPWCWCSWRRSDSYGRSAR 80
>SB_54262| Best HMM Match : CXC (HMM E-Value=5)
Length = 95
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -3
Query: 643 CRFP-LPAYSQRRCNRRRSTCWCRSDSYERND 551
C P L Q C R+ CW +D+Y++N+
Sbjct: 63 CNCPFLGCMRQHECLAGRAHCWLNNDNYDQNN 94
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,019,854
Number of Sequences: 59808
Number of extensions: 590650
Number of successful extensions: 1950
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1947
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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