Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0489.Seq
         (771 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ002686-1|CAA05690.1|  597|Caenorhabditis elegans alkyl-dihydro...    52   6e-07
AC024801-10|AAK68514.1|  597|Caenorhabditis elegans Alkyl-dihydr...    52   6e-07
Z81540-5|CAB04405.2|  946|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U76402-1|AAB39734.1|  777|Caenorhabditis elegans degenerin protein.    28   6.4  
U40798-3|AAA81473.2|  777|Caenorhabditis elegans Uncoordinated p...    28   6.4  

>AJ002686-1|CAA05690.1|  597|Caenorhabditis elegans
           alkyl-dihydroxyacetonephosphatesynthase protein.
          Length = 597

 Score = 51.6 bits (118), Expect = 6e-07
 Identities = 24/64 (37%), Positives = 39/64 (60%)
 Frame = +3

Query: 3   IRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDMKTGFNILREIMVEGYRPSIA 182
           I  II+G+EG L  ++EVT+KIF   PE   F  ++  + ++G N  RE+ ++  +P+  
Sbjct: 289 IHQIILGSEGTLGVVSEVTIKIFPI-PEVKRFGSFVFPNFESGVNFFREVAIQRCQPASL 347

Query: 183 RLYD 194
           RL D
Sbjct: 348 RLMD 351



 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 23/68 (33%), Positives = 34/68 (50%)
 Frame = +1

Query: 568 YQNGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWS 747
           Y  G  +YF + +N    K   E+   ++ +     +E I  GGS+ HHHG+GK R  W 
Sbjct: 500 YDAGACVYFYFGFNARGLKNGLEV---YDRIETAARDEIIACGGSISHHHGVGKIRKQWM 556

Query: 748 KLEHGARG 771
              +GA G
Sbjct: 557 LTTNGAVG 564


>AC024801-10|AAK68514.1|  597|Caenorhabditis elegans
           Alkyl-dihydroxyacetonephosphatesynthase protein 1
           protein.
          Length = 597

 Score = 51.6 bits (118), Expect = 6e-07
 Identities = 24/64 (37%), Positives = 39/64 (60%)
 Frame = +3

Query: 3   IRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDMKTGFNILREIMVEGYRPSIA 182
           I  II+G+EG L  ++EVT+KIF   PE   F  ++  + ++G N  RE+ ++  +P+  
Sbjct: 289 IHQIILGSEGTLGVVSEVTIKIFPI-PEVKRFGSFVFPNFESGVNFFREVAIQRCQPASL 347

Query: 183 RLYD 194
           RL D
Sbjct: 348 RLMD 351



 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 23/68 (33%), Positives = 34/68 (50%)
 Frame = +1

Query: 568 YQNGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWS 747
           Y  G  +YF + +N    K   E+   ++ +     +E I  GGS+ HHHG+GK R  W 
Sbjct: 500 YDAGACVYFYFGFNARGLKNGLEV---YDRIETAARDEIIACGGSISHHHGVGKIRKQWM 556

Query: 748 KLEHGARG 771
              +GA G
Sbjct: 557 LTTNGAVG 564


>Z81540-5|CAB04405.2|  946|Caenorhabditis elegans Hypothetical
           protein F46B3.5 protein.
          Length = 946

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +1

Query: 271 SHCEGDGRRDCGNRCPLPAMPARGQQADRNLV*QPELGTG*SG 399
           +HCE  G+RD GN+C    + A  + A R +   PE G G  G
Sbjct: 269 THCES-GKRD-GNKCCDARLAATMRDAMRQMATSPEFGPGKEG 309


>U76402-1|AAB39734.1|  777|Caenorhabditis elegans degenerin protein.
          Length = 777

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 652 CGTCRFPLPAYSQRRCNRR 596
           CG  RFPLP+   R CN +
Sbjct: 569 CGDPRFPLPSEEHRHCNAK 587


>U40798-3|AAA81473.2|  777|Caenorhabditis elegans Uncoordinated
           protein 8 protein.
          Length = 777

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 652 CGTCRFPLPAYSQRRCNRR 596
           CG  RFPLP+   R CN +
Sbjct: 569 CGDPRFPLPSEEHRHCNAK 587


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,876,460
Number of Sequences: 27780
Number of extensions: 424731
Number of successful extensions: 1083
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)