Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0489.Seq
         (771 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    27   0.15 
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   4.2  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   4.2  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   4.2  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   4.2  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 27.5 bits (58), Expect = 0.15
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +1

Query: 532  DITMLGGHSS-HSYQNGTNMYFVYDYNVVD-CKPEEEIDKYHNPLNKIICEETIRL 693
            ++ ML  + S HS+   T + FVY +NV+   K    +    NP    I    +RL
Sbjct: 915  NVNMLDTYESVHSFPTETGLPFVYTFNVIKLTKTSGTVQAQINPDFAFIVNSNLRL 970


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +1

Query: 568 YQNGTNMYFVYDYNVVDCKPEEEIDKYHNPL 660
           Y+NGT  Y +  + ++ C+    I  + +PL
Sbjct: 169 YRNGTVNYLMRRHLILSCQGRLNIFPFDDPL 199


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +1

Query: 568 YQNGTNMYFVYDYNVVDCKPEEEIDKYHNPL 660
           Y+NGT  Y +  + ++ C+    I  + +PL
Sbjct: 169 YRNGTVNYLMRRHLILSCQGRLNIFPFDDPL 199


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +1

Query: 568 YQNGTNMYFVYDYNVVDCKPEEEIDKYHNPL 660
           Y+NGT  Y +  + ++ C+    I  + +PL
Sbjct: 220 YRNGTVNYLMRRHLILSCQGRLNIFPFDDPL 250


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +1

Query: 568 YQNGTNMYFVYDYNVVDCKPEEEIDKYHNPL 660
           Y+NGT  Y +  + ++ C+    I  + +PL
Sbjct: 169 YRNGTVNYLMRRHLILSCQGRLNIFPFDDPL 199


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,830
Number of Sequences: 438
Number of extensions: 5417
Number of successful extensions: 29
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)