Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0489.Seq
         (771 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g06580.1 68418.m00743 FAD linked oxidase family protein simil...    31   0.84 
At1g34190.1 68414.m04241 no apical meristem (NAM) family protein...    30   1.9  
At5g27110.1 68418.m03236 pentatricopeptide (PPR) repeat-containi...    28   5.9  
At1g69360.1 68414.m07960 expressed protein                             28   5.9  
At4g00820.1 68417.m00113 calmodulin-binding protein-related cont...    28   7.9  

>At5g06580.1 68418.m00743 FAD linked oxidase family protein similar
           to SP|Q12627 from Kluyveromyces lactis and SP|P32891
           from Saccharomyces cerevisiae; contains Pfam FAD linked
           oxidases, C-terminal domain PF02913, Pfam FAD binding
           domain PF01565
          Length = 567

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 18/64 (28%), Positives = 34/64 (53%)
 Frame = +3

Query: 3   IRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDMKTGFNILREIMVEGYRPSIA 182
           +  +IIG+EG L  ITE+T+++ K  P++++        +K   ++    M+ G + S  
Sbjct: 295 LTRLIIGSEGTLGVITEITLRLQKI-PQHSVVAVCNFPTVKDAADVAIATMMSGIQVSRV 353

Query: 183 RLYD 194
            L D
Sbjct: 354 ELLD 357


>At1g34190.1 68414.m04241 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) protein;
           similar to NAM protein GI:6066595  [Petunia hybrida];
           nam-like protein 9 (GI:21105746)  [Petunia x hybrida];
           NAC1 GI:7716952 [Medicago truncatula]
          Length = 557

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -3

Query: 721 YRGGAPSNRRGEWFLHR*SC*AD-CGTCRFPLPAYS 617
           YRG APS  R +W +H  +   D  G C+ P   Y+
Sbjct: 124 YRGRAPSGERTDWVMHEYTMDEDELGRCKNPQEYYA 159


>At5g27110.1 68418.m03236 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 691

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
 Frame = +3

Query: 39  CYITEVTVKIFKFTPE------NNLFYGYILE-DMKTGFNILREIMVEGYRPS 176
           C   EV  ++F+  P       N++  GY+ + D K+   IL  +++EG RPS
Sbjct: 256 CDCLEVAREVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEGTRPS 308


>At1g69360.1 68414.m07960 expressed protein
          Length = 896

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 757 VPVCSSERDVYRYRGGAPSNRRGEW 683
           VPV SS RD+Y   G   S+ +G+W
Sbjct: 220 VPVSSSSRDLYSLYGANISHVQGQW 244


>At4g00820.1 68417.m00113 calmodulin-binding protein-related
           contains Pfam profile PF00612: IQ calmodulin-binding
           motif
          Length = 534

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
 Frame = -3

Query: 379 VQVVKPGFDQLAVHALALRVAGNDFRNPFARHLRNARVTFSQKISTHFPSAKWVKCWVPS 200
           ++ VK    Q   +AL  R + N     F+  +R  R ++S          KW+  W+ S
Sbjct: 246 IEEVKAMLQQRRDNALR-RESNNSISQAFSHQVRRTRGSYSTGDEYEEERPKWLDRWMAS 304

Query: 199 SASYKRA-IDGRYP 161
               KRA  D R P
Sbjct: 305 KPWDKRASTDQRVP 318


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,876,599
Number of Sequences: 28952
Number of extensions: 399785
Number of successful extensions: 1167
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1167
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)