Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0487.Seq
         (582 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                128   2e-30
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           85   3e-17
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)              75   3e-14
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     43   2e-04
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.22 
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               32   0.30 
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              31   0.91 
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)              30   1.2  
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              30   1.6  
SB_8749| Best HMM Match : SCP (HMM E-Value=4.9e-16)                    29   2.1  
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.8  
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    28   4.8  
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.4  
SB_33738| Best HMM Match : Pox_A32 (HMM E-Value=0.33)                  27   8.5  

>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score =  128 bits (310), Expect = 2e-30
 Identities = 58/60 (96%), Positives = 59/60 (98%)
 Frame = +2

Query: 14  MGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 193
           MGKGSFKYAWVLDKLKAERERGITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 1   MGKGSFKYAWVLDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60



 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 519 RKEGKADGKCLIEALDAILPP 581
           +KE  A G  L E LD+ILPP
Sbjct: 77  KKEANASGVTLFEGLDSILPP 97


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 85.4 bits (202), Expect = 3e-17
 Identities = 35/85 (41%), Positives = 57/85 (67%)
 Frame = +2

Query: 2   EAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMIT 181
           EA+E  + ++  +W LD  + ER++G T+++    F+T   + T++DAPGH+ F+ NMI+
Sbjct: 182 EAKEKNRETWYLSWALDTNQEERDKGNTVEVGRAAFDTDTKHFTLLDAPGHKSFVPNMIS 241

Query: 182 GTSQADCAVLIVAAGTGEFEAGISR 256
           G +QAD  VL+++A  GEFE G  R
Sbjct: 242 GATQADLGVLVISARKGEFETGFER 266



 Score = 70.5 bits (165), Expect = 9e-13
 Identities = 30/55 (54%), Positives = 43/55 (78%)
 Frame = +1

Query: 259 GQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNP 423
           GQTREHA+LA T GVK L++ VNKMD     ++E R+EEIK +++ ++KK+G+NP
Sbjct: 268 GQTREHAMLAKTAGVKHLVILVNKMDDPTVKWNEERYEEIKVKLTPFLKKVGFNP 322


>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score = 75.4 bits (177), Expect = 3e-14
 Identities = 32/54 (59%), Positives = 43/54 (79%)
 Frame = +2

Query: 86  IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAG 247
           +D+ L +F+T    +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG
Sbjct: 1   MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAG 54



 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 18/26 (69%), Positives = 22/26 (84%)
 Frame = +1

Query: 259 GQTREHALLAFTLGVKQLIVGVNKMD 336
           GQTREHA+L  +LGV QLIV +NK+D
Sbjct: 59  GQTREHAILVRSLGVTQLIVAINKLD 84


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 19/77 (24%), Positives = 37/77 (48%)
 Frame = +2

Query: 2   EAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMIT 181
           EA  +     K     D ++ ER+RGI++  ++  F      + I+D PGH+DF ++   
Sbjct: 39  EAGAVKSNKIKKGATSDFMEIERQRGISVATSVLAFNYRDKKINILDTPGHKDFAEDTFR 98

Query: 182 GTSQADCAVLIVAAGTG 232
             +  D  ++++    G
Sbjct: 99  TLTAVDSVIVVIDVAKG 115


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +2

Query: 128 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 232
           +T ID PGH  F      G +  D  VL+VAA  G
Sbjct: 78  ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +2

Query: 77  GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 223
           GIT  I  +  +     +  +D PGH  F      G    D  +++VAA
Sbjct: 123 GITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +2

Query: 53  KLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 220
           + K E ER ITI +         Y    +D PGH   +  M+ G +  D A+L++A
Sbjct: 49  RFKNELERNITIKLG--------YANAKVDCPGHDILMATMLNGAAVMDAALLLIA 96


>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
          Length = 203

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 13/85 (15%)
 Frame = +2

Query: 50  DKLKAERERGITIDIALWKFETSK-------------YYVTIIDAPGHRDFIKNMITGTS 190
           DK    +ERGIT+D+    F+ +                +T++D PGH   IK +I G  
Sbjct: 65  DKNPQSQERGITLDLGFSSFQVALPEHLRSAGSEHDLLQMTLVDCPGHASLIKTIIGG-- 122

Query: 191 QADCAVLIVAAGTGEFEAGISRTVK 265
               A +I   GT E   G S  VK
Sbjct: 123 ----AQIIGECGTIEGGFGQSGKVK 143


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 134 IIDAPGHRDFIKNMITGTSQADCAVLIV 217
           IID PGH  F      G+S  D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709


>SB_8749| Best HMM Match : SCP (HMM E-Value=4.9e-16)
          Length = 369

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 22/54 (40%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = -1

Query: 282 QGMLTGLTVLEIPASNSPVP--AATMSTAQSA*EVPVIMFLMKSLCPGASMMVT 127
           Q   TGLT  E+P S  PVP     MS  QSA   P  +     L PG +  VT
Sbjct: 118 QAPATGLTGFEMPLSTQPVPVIGGGMSCCQSANPPPCCL----QLKPGNNQSVT 167


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = +2

Query: 44   VLDKLKAERERGITI 88
            VLDKL+ ERERGIT+
Sbjct: 1977 VLDKLQVERERGITV 1991


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 122 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 232
           + + +ID+PGH DF   +       D A+++V   +G
Sbjct: 99  FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135


>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3112

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
 Frame = +1

Query: 337  STEPPYSEPRFEEIKKE----VSSYIKKIGYNPA-AVAFVPISGWHGDNMLE 477
            ST    S+  FE  KK      +S+ K    +P+  + FVP   WHG+ M+E
Sbjct: 1062 STRANSSQGGFEAKKKSWTKLSASFAKPEVVDPSDKIRFVPAVNWHGEQMIE 1113


>SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2499

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = -1

Query: 315 DELFDTEGESEQGMLTGLTVLEIPASNSPVPAATMSTAQSA*EVPVIMFLM 163
           D + DT   + +G  TG     IPA  SPVP A   +A  +   P+ + LM
Sbjct: 832 DMMADTPDTTPKGTATG-----IPAPVSPVPNAPADSATDSDSDPIAILLM 877


>SB_33738| Best HMM Match : Pox_A32 (HMM E-Value=0.33)
          Length = 437

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 547 HFPSALPSLRSTCIP*TKAFWLKAPTCCLRA 455
           H    L +LRS+C P ++AF L++  C  R+
Sbjct: 113 HTRQGLATLRSSCTPTSRAFALQSTACETRS 143


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,520,311
Number of Sequences: 59808
Number of extensions: 410875
Number of successful extensions: 1194
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)