Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0448.Seq
         (775 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    24   1.2  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    24   1.2  
AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    22   6.3  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.3  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.3  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.3  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   8.3  

>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 594 KKRLLYSLHFNGICGLTCL 538
           KK+L+Y + F  I  LTC+
Sbjct: 34  KKKLVYCIIFGAIATLTCI 52


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 594 KKRLLYSLHFNGICGLTCL 538
           KK+L+Y + F  I  LTC+
Sbjct: 30  KKKLVYCIIFGAIATLTCI 48


>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +1

Query: 208 VCGSAVFQIIQSIRLAKSRRQLENCYRKH 294
           + G  V +I+ ++    S  +++N Y KH
Sbjct: 243 ITGRFVIKILVALNFFTSTLEIDNLYLKH 271


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = -3

Query: 158 SFSLVVLGTFPLIVMFLLAISFAIRILCL 72
           S ++ +LGT+   +MF++A S  + ++ L
Sbjct: 268 SDAIPLLGTYFNCIMFMVASSVVLTVVVL 296


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = -3

Query: 158 SFSLVVLGTFPLIVMFLLAISFAIRILCL 72
           S ++ +LGT+   +MF++A S  + ++ L
Sbjct: 268 SDAIPLLGTYFNCIMFMVASSVVLTVVVL 296


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = -3

Query: 158 SFSLVVLGTFPLIVMFLLAISFAIRILCL 72
           S ++ +LGT+   +MF++A S  + ++ L
Sbjct: 268 SDAIPLLGTYFNCIMFMVASSVVLTVVVL 296


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 334 LCLNFRWIVLLFYCVF 287
           LC  +  + LLFYC F
Sbjct: 74  LCSGYFTVHLLFYCPF 89


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,987
Number of Sequences: 336
Number of extensions: 3715
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20857569
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)