Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0448.Seq
         (775 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    29   0.74 
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    27   3.0  
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    27   3.9  
SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1...    26   6.9  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      26   6.9  
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos...    25   9.1  

>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 29.1 bits (62), Expect = 0.74
 Identities = 20/70 (28%), Positives = 27/70 (38%)
 Frame = -1

Query: 550 LDLSLKIILKKRQKSSKILXXXXXXXXXPYVSASRFNPVSVKETSSHDCTVKGTNGRLRK 371
           +DLS   +   R K S +L                 +P S KE   H       N R+R+
Sbjct: 397 IDLSKSSLATPRPKLSSLLYENYSNQCANCGRRYGNDPESRKELDKHSDWHFRINKRIRE 456

Query: 370 HSLMSMKRCW 341
            SL  + RCW
Sbjct: 457 SSLHGINRCW 466


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 153 KRRPISCGTLAPCSLHLRSVWLCCIPDNPINK 248
           ++R I C  L PC   ++S   C  P++PI +
Sbjct: 23  RQRKIKCDRLHPCFQCVKSNSQCFYPEDPIRR 54


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 182 QGATGYWSSFSLVVLGTFPLIVMFLLAISFAI 87
           Q  TG W+   +V+   F ++V+FLLA  + I
Sbjct: 146 QNVTGNWTWAHVVICYVFNVLVLFLLARYYQI 177


>SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 221

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 196 FIFVVCGSAVFQIIQSIRLAKSRRQLENCYRKH 294
           FIF   G   F +   I   KS  +L++ +RKH
Sbjct: 135 FIFAPLGIVFFFLFMGITECKSYERLKSYFRKH 167


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +1

Query: 589 FFFYLNIFSIFS*LCTRL 642
           FFFY ++FS FS L T L
Sbjct: 110 FFFYFSLFSFFSFLFTSL 127


>SPBC409.12c |||nuclear telomere cap complex subunit
           Stn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 67  PFCFVIKYICQFIIKLKG 14
           P   + K+ICQF+++ KG
Sbjct: 291 PLSAIAKHICQFLLRTKG 308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,021,678
Number of Sequences: 5004
Number of extensions: 58291
Number of successful extensions: 129
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)