Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0448.Seq
         (775 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36609| Best HMM Match : Ion_trans_2 (HMM E-Value=1.7e-13)           32   0.59 
SB_51059| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_17097| Best HMM Match : F-box (HMM E-Value=3.8)                     29   3.2  
SB_15167| Best HMM Match : F-box (HMM E-Value=3.8)                     29   3.2  
SB_22055| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_50117| Best HMM Match : EB1 (HMM E-Value=3.6)                       28   9.6  

>SB_36609| Best HMM Match : Ion_trans_2 (HMM E-Value=1.7e-13)
          Length = 661

 Score = 31.9 bits (69), Expect = 0.59
 Identities = 16/59 (27%), Positives = 31/59 (52%)
 Frame = +1

Query: 100 IASKNITMRGNVPKTTKEKEDQYPVAPWLLALFIFVVCGSAVFQIIQSIRLAKSRRQLE 276
           +A++N    G  P+   ++ D+  + P     F++++ G+AVFQ I+S    + R   E
Sbjct: 128 LANQNKRFMGKSPRIGPKRPDE-KLTPRTTLFFVYLLFGAAVFQTIESGEERRERHHFE 185


>SB_51059| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 84

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 195 LHLRSVWLCCIPDNPINKTS*ITKT 269
           +H R +W+C +PD+P  +   IT T
Sbjct: 37  IHFRRLWICNLPDHPKYQNGIITST 61


>SB_17097| Best HMM Match : F-box (HMM E-Value=3.8)
          Length = 408

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 752 Y*MLLNINYFTLYKNYMETLTFWDYE 675
           Y   LN+  + LYK+Y+  L++W Y+
Sbjct: 114 YKSYLNVLLYWLYKSYLNVLSYWPYK 139



 Score = 29.1 bits (62), Expect = 4.2
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 752 Y*MLLNINYFTLYKNYMETLTFWDYE 675
           Y   LN+  + LYK+Y+  L++W Y+
Sbjct: 174 YKSYLNVLSYWLYKSYLNVLSYWPYK 199



 Score = 27.9 bits (59), Expect = 9.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 752 Y*MLLNINYFTLYKNYMETLTFWDYE 675
           Y   LN+  + LYK+Y+  L++W Y+
Sbjct: 54  YKSYLNVLSYWLYKSYLNVLSYWLYK 79


>SB_15167| Best HMM Match : F-box (HMM E-Value=3.8)
          Length = 392

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 752 Y*MLLNINYFTLYKNYMETLTFWDYE 675
           Y   LN+  + LYK+Y+  L++W Y+
Sbjct: 98  YKSYLNVLLYWLYKSYLNVLSYWPYK 123



 Score = 29.1 bits (62), Expect = 4.2
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 752 Y*MLLNINYFTLYKNYMETLTFWDYE 675
           Y   LN+  + LYK+Y+  L++W Y+
Sbjct: 158 YKSYLNVLSYWLYKSYLNVLSYWPYK 183



 Score = 27.9 bits (59), Expect = 9.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 752 Y*MLLNINYFTLYKNYMETLTFWDYE 675
           Y   LN+  + LYK+Y+  L++W Y+
Sbjct: 38  YKSYLNVLSYWLYKSYLNVLSYWLYK 63


>SB_22055| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 377

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -3

Query: 227 NTAEPHTTKMKRARSQGATGYWSSFSLVVLGTFPLIVMFL 108
           +TAEPHT   +  ++ G  G W  F +  L T PL+V  L
Sbjct: 138 STAEPHT---EMRQTSGCQGLWGQFIISALLT-PLVVHLL 173


>SB_50117| Best HMM Match : EB1 (HMM E-Value=3.6)
          Length = 362

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 281 QFSSCLRDLASLIDWIIWNTAEPHTTKMKRARSQGA 174
           +FSS + D A +  W I +T  P  TK +   ++GA
Sbjct: 185 EFSSAMLDQARIDPWGILSTGSPIVTKNRAPDNEGA 220


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,964,329
Number of Sequences: 59808
Number of extensions: 424453
Number of successful extensions: 978
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)